Solanum stenotomum: 125864428 Help Entry 125864428         CDS       T08385                                  Name (RefSeq) pre-mRNA-splicing factor prp12   KO K12830   splicing factor 3B subunit 3 Organism sstn  Solanum stenotomum Pathway sstn03040   Spliceosome Brite KEGG Orthology (KO) [BR:sstn00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     125864428  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:sstn03021]     125864428    03041 Spliceosome [BR:sstn03041]     125864428    03036 Chromosome and associated proteins [BR:sstn03036]     125864428 Transcription machinery [BR:sstn03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      125864428 Spliceosome [BR:sstn03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     125864428  Complex B     125864428  Complex C    U2 SnRNP specific factors     125864428 Chromosome and associated proteins [BR:sstn03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      125864428     TFTC complex      125864428 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A Motif Other DBs NCBI-GeneID:  125864428 NCBI-ProteinID:  XP_049400385 LinkDB All DBs Position 5:complement(60638269..60651390) Genome browser AA seq 1393 aa AA seqDB search MAVSEEESSSSSSAGSSKSRSYASRGASYLAKTVLRGSVVLQVVYGRIRSSTSYDVVFGK ETSIELVIIDEDGVVQSICEQPVFGIIKDIAVLPWNEKFRVGSPQLLGRDLLVVISDSGK LSVLRFCNEMHRFFAVTHVQLSSPGNPTDQIGRMLAVDSNGCFIAASAYEDSLVLFSRSA SAGSDIFDKRIFCPTDKQGKIETANGFTSICGTIWSMCFIAKDVQPNKNYNPILAILLNR RRSYRSEIMLIEWNTKEHSLYVVYQYSELGPLAHHIVDIPHSYGLVLVLRAGDAIVMDFK VPHSPCFVYRISLNFTPPSVEEQNFVRETIRIPDIIDEEGMYSVAASALLELSDLNKNDP MNIDDDSNVKPGSNFVCSWSWNPGNENSPRMIFCADSGELFLIEFLFDSDGLKVSLSDCL YKTLPAKALLWVRGGFLAVIVEMGDGMVLKVEDGRLVYRSPIQNIAPILDMSVVDYHDEK HDQMFACCGMAPEGSLRVIRSGISVEKLLKTSPIYQGITGTWTVKMKLADSYHSFLVLSF VEETRVLSVGVSFSDVTDFMGFQPDVCTLACGLVGDGLLVQIHQTAVRLCVPIAAAHPDG IDLASPTFMSWSPDNMTISLGAVGPNLIVVATSSPCYLFILGIRTISAHHYEIYQMQHVK LQDELSCISIPQRRLEQTSFISRTSNANGVPLDSLPVGLDISNIFVIGTHKPSVEVLSFT SDKGLSVLAVGSITLTNTLGTTVSGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSISA VSSLVSPGLQTFDNSCMVNCTSSSIFASQNFRTQPTQVTSLLDKTKDFPVYLQLVAVRRI GITPVFLIPLNDSLDADVIALSDRPWLLQTARHSLSYTSISFPPSTHVTPVCSTECPKGI IFVAENSLHLVEMVPSKRLNVQKFHFGGTPRKVLYHSDSRLLLVLRTDLSDDLCSSDVCC IDPLSGSVLSSFKFEPGEIGKCMDLVKAGNEQVLVVGTGLSSGPAIMPSGEAESTKGRLI VLCLEQMQNSDSGSIAFSSRAGSSSQRTSPFREIGGYAAEQLSSSSLCSSPDDNSCDGIK LEESEAWHLRLGYSTTWPGMVLAVCPYLDRFFLASAANCFYVCGFPNDNAQRVRRLAVGR TRFMIMTLTAHFTRIAVGDCRDGILFYSYQEDARKLDQVYCDPVQRLVSDCTLMDGDTAA VSDRKGSLAILSCLNHLEDNFNSPERNLALTCSFYMGEIAIRIRKGSFSYKLPADDALRG CQVASNVGDISQNSIMASTLLGSIIIFIPLTREEYDLLEAVQARLVIHPLTAPILGNDHT EYRCRGSTARAPKALDGDMLAQFLELTSMQQEAVLALPLGAQNTIMFNSKQSPDPITVNQ VVRLLERIHYALN NT seq 4182 nt NT seq  +upstreamnt  +downstreamnt atggcggtttccgaggaagaatcatcgtcttcatcctctgccggtagcagcaagtcccga tcatatgcttctcgtggtgctagttatttggctaagactgttcttagaggaagtgttgtt cttcaagtggtttatggtcgtatacgctcttcaacttcatacgatgtcgtttttggcaag gaaacatctatagaattggtgattatagatgaagatggggttgtgcagtctatttgtgag cagcctgtatttggcataataaaagatatagctgtccttccctggaatgagaagtttcgt gttggaagcccacagcttctgggcagggatctcttggttgttatttcagattcagggaag ctgtcagttctcagattttgcaatgaaatgcacaggtttttcgctgtaacacatgttcaa ctttcgtctcctggaaatcctacggatcaaattggaagaatgttagccgttgattccaat ggttgttttattgcagctagtgcatatgaagacagtttggtgcttttctcccgctctgct tcagctggcagtgatatatttgataagagaatcttttgtcccactgacaagcaagggaag atcgagactgcgaatggttttaccagtatctgtggtaccatatggagtatgtgctttatc gcaaaagatgttcaaccaaataagaattacaatcctatattggccattcttctcaatagg aggagatcatataggagcgagatcatgttgattgagtggaatacgaaggagcattcgctc tatgtagtatatcagtattctgaacttggaccactagcacatcatatcgtagatattcct cattcttatggactcgtgttagtacttcgtgctggggatgctatagtgatggactttaaa gttcctcatagcccttgttttgtttatcgaataagtttaaattttacccctccttcagtt gaggagcagaattttgtacgagagactattagaattccagatattatagacgaagaaggt atgtatagtgttgcggcatctgcattgcttgagctcagcgatttgaataaaaatgaccca atgaatattgatgatgatagcaatgtgaagccaggttcgaatttcgtgtgctcatggagt tggaatcctggaaatgagaacagtcctagaatgatattttgtgcagactctggagagctt ttcttgattgaatttttatttgattctgatggcctgaaagtatctctgtctgattgtctt tacaagactctaccagccaaggcacttttgtgggtgagaggtggatttttggcagttatt gttgagatgggtgatgggatggtgctaaaagttgaagacggaagacttgtttatagaagt ccaatccaaaatatcgcaccaatattggatatgtcggttgtggattaccatgatgagaaa catgatcaaatgtttgcctgctgtgggatggcacctgaaggatctttacgagttatacgt agtggcatcagtgtagagaaattgttgaaaacttctcccatttatcagggtattactgga acttggacagttaaaatgaaacttgctgattcttatcattctttccttgtactgtccttt gttgaagagaccagggtgctatctgttggtgtgagcttttctgatgtaaccgacttcatg ggtttccaacctgatgtttgcacgttggcatgtggtcttgtgggtgatggtctgctggtg caaatccaccagactgctgtgagactgtgtgtacctattgctgctgcacatccagatggt attgatttggcatcaccaactttcatgtcgtggtcccctgataatatgacaataagcctg ggagctgttgggcctaatttgattgttgttgcaacttccagtccatgttacctattcatt cttggcatcaggacaatatcagcccatcattatgaaatataccagatgcaacatgtgaaa ttgcaagatgaactttcctgcatctcaatcccccaaagacggcttgagcaaacatctttt atctctagaactagtaatgcaaatggagttcctctggattctcttccggtcggattggac atcagtaacatcttcgttatcggtacacataagccttctgtagaagttctatcatttact tctgataagggtctgagtgttcttgctgtagggtctataaccttaacaaacactcttgga acaactgtaagtgggtgcatccctcaagacgtaagacttgtcctcgtcgatcggctttat gttctttcaggattgaggaatggtatgctactcagatttgagtggccttctatctcggca gtttcctcactagtctcacctggccttcagacttttgacaattcttgtatggttaattgc actagttcctcaatttttgcatctcagaattttagaactcaacctacacaagtgaccagt ttattggataagacgaaggattttcctgtttatctgcagttagttgcagttcgtcggatt ggcatcactcctgtttttttgattccattaaatgattctcttgatgctgatgtgatcgct ctaagtgataggccctggctattgcaaactgcaaggcatagcctctcgtatacttcaata tcttttccaccttccacacatgttactccagtttgttcaactgaatgtcccaagggaatt atctttgttgctgaaaacagtcttcatttggtggaaatggtgcctagtaaacggcttaat gtgcagaaatttcattttggcggtactcctcgaaaggttttatatcatagtgacagcagg ttgttgcttgtattaaggactgatctcagtgatgatttatgttcatctgatgtctgctgc atagatcctctcagtggatcagtgttgtcatcctttaagtttgagcctggggagatagga aaatgcatggacttggtaaaagccggaaacgaacaagttcttgttgttggaactggtctc tcttctggtccagctataatgcctagtggtgaagctgaaagtacaaagggccgtctaata gttctttgcctcgagcaaatgcaaaactcagatagtggatcaattgcattttcttcgagg gctgggtcatcttctcaacggacttcacctttccgtgagattggtggatatgccgccgaa cagctgtctagcagtagtctctgtagcagtcctgatgataacagctgtgacgggattaag cttgaggaaagtgaagcatggcacttaagattaggttattcaaccacttggcctggaatg gtgcttgcagtctgcccttatcttgatcgttttttcttggcctctgcggctaattgtttc tatgtttgtggttttccaaatgataatgcccaaagagtcagacgcttagcagtagggaga acacggttcatgatcatgactcttactgcacacttcactagaattgctgttggtgattgt cgtgatggcatcctcttctactcgtatcaagaggatgcaagaaaactagatcaagtttac tgtgaccctgtccagaggttagtttctgattgcactcttatggatggagacacagctgcc gtttcagatcggaaggggagtttagccattttatcatgtctgaatcacttggaagataat ttcaacagtccagaacgcaatctagctctaacttgttcattctacatgggcgagatagct ataagaattcgaaaggggtcattctcctataaacttccagcagatgatgcacttaggggc tgtcaagttgccagcaatgtcggtgacatatcacaaaatagtatcatggctagtacgctt ttagggagcataattatttttattcctcttactagggaggaatatgatctcttagaagca gtacaggctaggcttgtcatccatccgctgactgctcctattttgggaaatgaccatact gaataccgttgtcgtgggagtacggctagggcacctaaagctctggatggtgatatgctt gctcagttcttggagcttactagtatgcaacaagaagctgtattagcattgcctcttggt gcacaaaacaccattatgttcaattcaaagcaatctcctgatccaattactgtcaatcag gttgtgcgactgctagaacgcattcattatgccctgaactga

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