Solanum stenotomum: 125864448
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Entry
125864448 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125864448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864448
03036 Chromosome and associated proteins [BR:
sstn03036
]
125864448
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125864448
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125864448
mRNA degradation factors
5'-3' decay
Decapping complex
125864448
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125864448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
125864448
NCBI-ProteinID:
XP_049400414
LinkDB
All DBs
Position
5:8450416..8465043
Genome browser
AA seq
491 aa
AA seq
DB search
MNPRGRYPPPGMGGGGGGGGRGGGHMYPNANPNFQSRNPQQYVQRGPVNQQQLFQNQQTQ
QWLRRNQLASDSTVDEVEKTVQSEAVDQSSQDWKARLKIPPADTRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDVNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLARKGICVLKDCSMLVMDEADKLLSPEFQPSIVQLIRFLPANRQVLMFSATF
PVTVKDFKERYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGFSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQAIYCL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagaggaagatatccaccgccgggaatgggcggcggcggtggaggcggcggc
cggggtggcggacacatgtaccctaacgctaaccctaattttcaatcgagaaatccacag
cagtatgtgcagagaggtccggtgaaccagcagcagctgtttcagaaccaacagacacag
caatggctcagaaggaaccagttggcatctgattctactgttgatgaggttgaaaagacg
gtacaatctgaagcagttgaccaaagttcacaagactggaaggcgaggttgaagatacca
ccagcggatactagatacaggacagaggatgtgacagcgaccaagggaaatgaatttgaa
gactattttcttaagcgtgaattgcttatgggaatttatgaaaagggttttgaaagacca
tctccaatccaggaagagagtatcccaattgctcttactgggagtgatattttggctagg
gccaaaaatggaacagggaaaactgctgccttctgcattccggcattggaaaaaattgac
caggacgtcaatgccattcaagttgttatccttgttcctacgcgagaattggctcttcaa
acatctcaagtttgcaaagaacttgggaagcacttaaaaattgaagtcatggttaccact
ggggggaccagcttgaaggatgatataatgcgactctatcaaccggttcatttactagtt
ggaacccctggaagaatactcgaccttgcgagaaagggaatatgtgttttgaaagattgt
tccatgcttgtcatggatgaggctgataagcttctttctccggagtttcaaccttccatc
gtgcagctgattcgtttcttgccagcaaatcgtcaagttttaatgttctctgctacattc
cctgtcacagtcaaggactttaaagaaagatatctgcagaagccatatgttatcaacctt
atggatgaacttactctcaagggtataacacaattttatgcctttgtagaggaaaggcag
aagcttcattgcctcaacactttattctcaaagcttcaaatcaaccaatcaattatcttt
tgcaactctgtaaaccgtgtggaactgcttgccaagaagatcacagagttaggcttttca
tgcttctacatccatgcaaagatgcttcaagatcataggaacagagtatttcatgacttc
cgtaatggtgcctgcaggaaccttgtttgtactgatctgtttactagagggatagatatt
caagcagtcaatgttgttataaattttgatttcccgaagaactcagagacatatttacac
agggttgggcgttcagggagatttgggcatcttggtttagctgtgaacctgattacttat
gaggatcgcttcaacctgtatagaattgaacaagaactaggaacagagatcaagcaaatt
cctccgcacatagatcaggctatatattgcctttga
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