Solanum stenotomum: 125864636
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Entry
125864636 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125864636
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125864636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864636
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125864636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
125864636
NCBI-ProteinID:
XP_049400620
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Position
5:complement(2103422..2109618)
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AA seq
319 aa
AA seq
DB search
MTNLPQFSIGAGGGFGGFGGVASPSLAGAGASANNDRNMQSAEQLVLDLSNPELRENALL
ELSKKRELFLDLAPLLWNSCATIAALLQEIISIYPVLSPPTLTPALSNRVCNALALLQCV
ASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLS
TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVARVLGNMVGTL
AEQPSSRLLKHIIRCYLRLSDNPRACDALRGCLPDILGDTTFQSCLRDDPMTRRWLQQLL
HSVNGNRVALQAGGFDHML
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacttacctcagttctcaatcggcgccggcggaggtttcggaggttttggagga
gttgcatcgccgtcgttggccggtgccggagcttcggctaataacgatcgcaacatgcaa
tcggctgaacagctagtgcttgatctcagcaatcctgaacttcgtgaaaatgctcttcta
gagctttctaagaaaagggaacttttcctggatttggcccctttattgtggaactcatgt
gctactatcgctgctctgctacaggagataatttctatctaccctgttttgtcgcctcca
actctgactcctgcactatccaatagagtttgtaatgcactagcacttcttcagtgcgta
gcctctcatcctgacaccagaatgttgttcctcaatgcacatattcctttgtatctgtac
ccctttcttaatacaacgagcaagtcaagaccttttgaatatctgagacttacaagctta
ggtgtcattggtgcccttgtgaaggtggatgacactgaagttatcagttttcttctttca
acagaaataattccgttgtgcttgcgcacgatggagatggggagtgaactatcgaaaact
gtggcaactttcattgtgcaaaaaatccttctagatgacgtgggtctggattacatctgt
accacagcggaaaggttttttgcagtagcccgagttctagggaatatggtcggcacactt
gctgaacaaccttcatcaagattgctgaaacacataattaggtgctatcttcgtttgtca
gataatccaagggcatgtgatgcactgagaggttgtcttcccgatatacttggagatacc
accttccagagttgtcttcgtgacgatccaatgacgaggaggtggctgcaacaattgctc
catagcgttaatgggaatcgggttgctttacaggctggaggatttgatcatatgttgtga
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