Solanum stenotomum: 125864736
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Entry
125864736 CDS
T08385
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125864736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125864736
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125864736
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
HECT type E3
125864736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
125864736
NCBI-ProteinID:
XP_049400753
LinkDB
All DBs
Position
5:complement(57237093..57249362)
Genome browser
AA seq
1847 aa
AA seq
DB search
METRSRKRTEATSSAPSASSPSSGPTTRAVKRARFTTRAASNSISTRSRLTNRSQDQQSM
DSTNESSGSGSRTRRGKNHGADRNNPEKGKEKEHEIRDRDRDMGLNMDTDGGDEDDNESE
GGAGILQHNLTSASSALQGLLRKLGAGLDDLLPSSAMVSASSSQQNGRLKKILSGLRADG
EEGKQIEALTQLCVMLSIGTEDSLSTFSVDSFVPVLVGLLNHMSNPDIMLLAARALTHLV
DVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQALKKISQEDPTACLQAGALMAVL
SYLDFFSTGVQRVALATAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASICLT
RIAEAFASSPEKLDELCNHGLVTQAASLISTSNSGGGQASLSTETYTGLIRLLCTCASGS
PLGAKTLMMLGISGILKDILSASVSISPAMSRPAEQIFEIVNLVNELLPPLPQGTISLPV
STNLFIRGPFTRKSSASGSSKQEDLNASSQEVSAHEKLLNDQPELLQQFGMDLLPVLIQT
YGSSVNTAARHKCLSVIGKLMYFSNADMIQSLINDTNLSSFLAGVLAWKDPQVLVPALQI
AEILMEKLPRVFGKMFVREGVVHAVDALMLSGSHVSAPPHPTRAEKEKHNRRRSTNSNTD
AISVEDLTSPVPSTGSLPNSIEIPTVNSSLRMSVSTCAKAFKDKYFPSDSEAAEAGVTDD
LIQLKNLCMKLNAGIDEQIAKPKGKFKTFGPQLGDSSVGKEESLAEVIAAMMGELSKGDG
VSTFEFSGSGVVASLLKYFTFAYLSKERISDTSMSRLRQKAIRRYKSFIAVALPAGVDGG
SMVPMTVLVQKLQNALCSLERFPVVLSHSSRSSAGNARLSSGLSVLSQPFKLRLCRAQGE
KTLRDYSSNVLLIDPLASLVAIEEFLWARVERPEAEQKASASAGNSGSGTIPAGGSASSP
SMSTPASASRRHSARSRSAVNINESDGSSSKGKGKAVLKPAQKDGRGIRSRDPARMRAAL
AKALGEEKPGDGETSSEDDELHPSLIELDDALVIEDDMSDEDEDDHDDVLRDDPLPICMA
DEVHDVKLGDSSEDSPFAQTPTGSNTNAAGGSRSRIASARGSDSVEFRSRNSYGSRGAMS
FAAAAMAGLSSASVRGVRGSRDRHGHPLLSSGDPPKLIFSVGGKPLNRQLTIYQAIQRQL
VLDEDDDERYGGNDFVSSDGNRVWSDIYTITYQRADNQAERSSGSGSSISKSMKTSSSTS
SSADPSLVRASLLDSILQGELPCDLEKSNPTYSILYLLRVLEALNQLAPRLRVLSMIDDF
SEGKISSLDELSTTGIKIPSEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPF
LFPFETRRQYFYSTAFGLSRALYRLQQQQGADGNGSTHERAVRVGRLQRQKVRVSRNRIL
DSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLISHDLQKLGLGMWRSGLSLTSN
EHSMEVHIDNKLSRSDRDLVQAPLGLFPRPWSPHTGTVDGGQFCKAIEYFRLLGRVMAKA
LQDGRLLDLPLSMAFYKLVLGQELDLYDILSFDAELGKTLQELQALVSRKQYIESIKDQN
LDKSYDMRFRGTPVEDLCLDFTLPGYPEYVLKAGDENVDLSNLEEYISLVVDATVKTGIR
QQMEAFRSGFNQVFDFSALQIFSPSELDYLLCGRRELWKPETLVDHIKFDHGFTSKSPPI
IHLLEIMGEFTPEQQRAFCQFVTGAPRLPAGGLAALNPKLTIVRKHSSSAGNAAHSSNAP
SESADEDLPSVMTCANYLKLPPYSTKEIMSKKLLYAINEGQGSFDLS
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccggaaacgaacggaggccacgtcatcagcgccttctgcttcttct
ccttcatcaggtcccaccacacgcgctgttaagagagctcgttttaccacacgcgccgcc
tcaaactcgatctcaactcgttcccgactcacaaatcgttcccaagaccaacaatcgatg
gactccacgaatgaatcatccgggtcgggcagccgaaccaggcggggaaagaatcacggg
gcagatagaaataatccggagaagggtaaggagaaagagcacgaaattagggatagagac
agagatatgggattgaacatggatactgatgggggtgatgaagatgataatgaaagtgaa
ggtggtgctgggattttgcaacataatttgacttcagcaagtagtgcacttcaaggattg
ttgagaaaattgggtgctggtttggatgatttactgccgagttcagcaatggtgtccgct
tcctcgtcccaacagaatgggcgtctgaagaagatattatcgggcttgagagctgatggg
gaagaagggaagcaaatagaggcattgacgcagctttgtgtgatgctttccattgggaca
gaagactctttgagcactttttcagtggactcgtttgtacctgtcctggtggggttgctt
aatcatatgagtaatcctgatattatgcttctcgcagctagggcgttaacccatttggtt
gatgttctgccatcttcttgtgctgctgttgtgcactatggagcggtttcatgttttgta
gctcgcttactcacgattgaatacatggacttagctgaacagtctctacaagctttaaag
aagatatctcaagaagatccaactgcttgtttgcaagcaggtgcactcatggctgtgcta
tcgtatctcgatttcttttccactggtgttcagagagtagcactagcaactgctgctaat
atgtgcaagaagctgccttcggatgctgctgactttgtgatggaagctgttccattgttg
acgaatctccttcagtatcatgatgcaaaggtattagagcatgcttctatctgcttgacc
cggattgctgaagcatttgcatcatctccagaaaagctagatgaactctgtaatcacgga
cttgtcacacaggctgcctccctcatctcaaccagtaattctggaggtggtcaggcttca
ctcagcacagaaacttacacaggcttgatccggcttctttgtacttgtgccagtggctct
ccattaggggctaaaaccttgatgatgcttggtatcagcgggatcctcaaggacatttta
tcagcctctgtctctatttcacctgccatgagcagacctgcggagcagatttttgagatt
gtgaatcttgtaaatgaactacttcctccgctgcctcaaggaaccatctctcttcccgtt
agcacaaatttgttcattagaggtccttttacgaggaaatcctctgctagtggttctagc
aaacaggaggatctgaatgcatcttctcaggaggtatcagctcatgagaaactattgaat
gatcaacctgaacttctgcaacaatttggaatggatctccttcctgttctgatccagaca
tatggatccagtgtaaatacagcagcacgccacaaatgcctctcagttattggaaaactt
atgtatttcagtaatgcagatatgattcagtctttaattaatgacactaacttgtcaagt
ttcttggctggggttttggcgtggaaggatccccaagtattggtccccgctcttcaaata
gcagagattctaatggagaagctccctagagtttttggcaagatgtttgtccgggaaggt
gttgttcatgctgtagatgccttgatgttgtctgggtctcatgtttctgcccctccccat
ccaacacgtgctgagaaggagaaacataatagacgccgtagcactaattccaatacagat
gcaatttctgttgaagatcttacaagtccagttccaagtactggatctttgccaaattcg
atagaaattccgactgtcaattctagccttcggatgtcagtcagtacatgtgcaaaagct
ttcaaggataaatacttcccatcagattctgaggctgctgaagctggtgtcacagatgat
cttatacaattgaagaatctctgcatgaagttgaatgctggtattgatgagcagatagct
aaacctaaaggaaaattcaaaacatttggtcctcagcttggggatagttctgttggaaaa
gaagaaagcttggctgaagtgatagctgccatgatgggggaactcagcaaaggggacggt
gtttcaacttttgagttcagtggaagtggagttgttgcgtctttgctgaaatattttacg
tttgcgtacctttctaaggaaagaatctctgatactagtatgtctaggcttcgacaaaaa
gcaatcagaagatacaagtcttttattgcagttgcccttcctgctggtgttgatggtgga
agtatggttcccatgactgttctggtccaaaagcttcaaaatgctctatgttcgttggag
cgttttcctgttgtgttaagtcatagttccagatcatcggcaggaaatgcacgtctttct
tcaggtttaagtgttttgtctcagccttttaagctgcgcctttgcagagctcaaggagag
aaaaccctccgtgactactcttcaaatgttttgctgattgatcctttggcaagtttagtt
gctattgaagaattcctctgggcccgagttgagcgacctgaggctgaacagaaggcctct
gcttctgcaggaaactctgggtctgggactatacctgctggaggcagtgcgtcatctcca
tctatgtccactcctgcctctgcatctcgtcgtcattctgctcgatcaaggtcagcagtt
aatattaatgaaagtgatggaagctcttcaaagggcaaaggtaaagcggttttgaagcct
gctcaaaaagatggcagaggaattcgatcaagagatcctgctagaatgagagctgccttg
gcgaaggccttaggagaggagaaacctggtgacggggagactagttcagaggatgacgag
ctgcatccttctctcattgaacttgatgatgctttggtgattgaggacgatatgtccgac
gaagatgaagacgaccatgatgatgtgctgagggatgatcctcttcctatctgcatggca
gatgaagtgcatgatgttaaattgggagactcttcggaggatagcccttttgcacagaca
ccaactggtagcaatacaaatgctgctggtggttctaggagcagaattgcttctgctcgg
ggatctgattctgttgagttcagaagtaggaattcctatggttcaagaggggcaatgtca
tttgctgctgctgccatggctggtctttcatctgctagtgttagaggtgtgaggggctct
agagatcgacatgggcatcctctactcagctctggtgatccaccaaaactaatattttct
gttggtgggaagccgcttaataggcagttgactatctaccaggctatccagcggcagctt
gttctagacgaggatgatgatgagagatatggtggcaatgattttgtatctagtgacgga
aacagggtttggagtgatatttacactatcacataccagagggcagacaaccaagctgag
aggtcgagtgggtctgggagttcaatttccaagtctatgaaaaccagttcttcaacaagt
tccagtgctgatccttcattggttcgagcatcattgttagatagtatattgcagggagaa
cttccttgtgatctggagaaaagtaaccctacttacagtattttgtacctcttacgtgta
ctggaggcgctgaatcagcttgccccccgtttgcgagtcctgtccatgattgatgatttc
tctgaaggaaaaatttctagtctagatgagctcagtactacgggtatcaaaattccctct
gaggaatttgtcaatagtaagctcactccgaaattggcacgacagatccaggatgctctt
gcactttgtagtggatctcttccatcttggtgttaccagttgaccaaggcctgcccattt
ctttttccatttgagactcggcgccagtacttctattcaactgcttttgggttgtcacgt
gctttatataggctgcagcaacagcaaggtgctgatggtaatgggtctactcatgagaga
gcagttagggttggcagattacagcgccagaaagttcgtgtctcaaggaaccgcattctg
gattctgctgcaaaagtaatggagatgtactctagccaaaaagctgttcttgaagttgaa
tattttggtgaagttggtactggcctgggtcctacactggagttttatacccttataagt
cacgatctacagaaacttggacttggaatgtggagatctggtttatcattaacttcaaat
gaacattctatggaagttcatatagataataaattaagtaggagtgatagagatcttgtc
caagcacctcttggattattcccacgtccctggtcaccacatactggtactgttgatgga
ggtcaattctgtaaggcaattgaatatttccgcttgcttggacgtgttatggcaaaagct
cttcaagatggacggcttttggaccttccactgtccatggccttctataagcttgttctt
ggccaagaacttgatttgtacgatattctttcttttgacgccgaattggggaagactttg
caagagttgcaagcccttgtcagtcgaaagcaatatatagaatcaataaaagatcagaac
ctggacaaatcttatgacatgcgttttcgtgggactccagttgaggatctttgtttagat
ttcacacttcctggctatcctgaatatgttcttaaagcaggcgatgagaatgtggatctc
agtaacttggaggagtacatttctttggtagttgatgctactgtcaaaactggaatcagg
cagcaaatggaggcttttagatctggcttcaatcaggttttcgacttttcagctctgcaa
atattctctccttcagagttagactatctattatgtggccgtagagagctgtggaagcct
gagacgctagtagatcacattaaattcgatcatggattcacatccaagagtcctcccatt
attcatttactagagattatgggagagttcacacctgagcagcaacgagcattctgccag
tttgtcactggtgcacctcggctccccgcaggtggtcttgctgctctgaatcctaagttg
acaattgtgaggaagcattcatctagtgctggcaatgcagcacacagcagtaatgcccca
tcagaatctgcagatgaagacctgcccagtgtgatgacatgtgctaattacttgaaactc
cctccctattctactaaggagatcatgtccaagaagttactctatgccattaatgaaggt
caaggatcgtttgatttgtcataa
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integrated database retrieval system
