Solanum stenotomum: 125864784
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Entry
125864784 CDS
T08385
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125864784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864784
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125864784
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_2
TPR_Slam
TPR_CcmH_CycH
Mt_ATP-synt_D
TPR_9
ANAPC3
Motif
Other DBs
NCBI-GeneID:
125864784
NCBI-ProteinID:
XP_049400803
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Position
5:complement(43592694..43637167)
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AA seq
741 aa
AA seq
DB search
MTDKYNVEAAEILANEALRSPISEAVPLYEQLLSTFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGNEGQEETRKAFDFMLNYVGADIASGPVWM
EYIAFLRSLPAPTAQEESQRMTSVRKIYQRAIVTPTHHVEQLWRDYENFENSISRALAKG
LVSEYQPKYNSARAVYRERKKYTDEIDWNMLAIPPSGSSKEEMQWMAWKKLLAFEKANPQ
RIDSAYANKRIVFTYEQCLMYLYHYPDIWYEYATWHAKAGSVDSAIKVFQRSLKALPDSE
MLRYAYAELEESRGAIQAAKKVYESLFGDGSNASALSHIQFIRFLRRSEGVEAARKYFVD
ARKSPNCTYHVYVAYAMMAFCLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEESVEVWKKFTQFEQTYGDLASMLKVEQRRKEALSRTGDDGASE
LESSLHDVVSRYSFMDLWPCSSNDLDHLARQEWLARNINKKPDKPTLGIEAGSADKTTSG
VSSNTNPPAKVVYPDTSKMTVYDPRQIPGPAALAAPSASGTLPYSGPFSSNGPPNALNDI
LKSLPPAFAAFIANLPAVEGPSPDADFVISVCLQSNIPAATGKSGTASLPLQSGAAPSTS
DLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQPLPRDLFKIRQLQKNRVGNSSRVTS
SYTGSASYGSALSGDLSGSTS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgacggacaagtacaatgttgaagctgcagaaattcttgcgaacgaggcactgcgctcg
ccaatttcggaagcagtgcctttatatgagcagcttctatcgacgtttcccacagcggca
aaatactggaagcaatatgttgaggcacacatggcggtaaataatgatgatgcgacaaaa
caaatatttagtcgctgcctgttaaactgtctacagattccactttggcgctgttacatc
cgctttattaggaaagtcaacgacaagagggggaatgagggtcaagaagagacaagaaaa
gcttttgatttcatgcttaactatgttggagcggacatagcatcaggtccggtgtggatg
gagtacattgcatttttaaggtctttgcctgctccgactgcacaagaagaatcacaacga
atgacctctgtgaggaaaatataccagagagctattgtcaccccaacccatcatgtggaa
cagctttggagggactatgagaattttgaaaattcaattagtcgagccttggcaaaagga
ctggtttctgaatatcaacctaaatataacagtgcgagggctgtatatagagaaaggaag
aagtacactgatgaaattgattggaatatgctagcgattccgccctccggctcttccaag
gaggaaatgcaatggatggcatggaaaaaacttcttgcctttgagaaagcaaacccacag
aggatagacagtgcttatgctaataaaagaattgtgttcacatatgagcagtgcctcatg
tacttgtatcattatcctgatatatggtatgaatatgccacatggcatgcaaaagctggt
tcagtagactccgctatcaaggttttccagcgatctttgaaagcacttcctgactcggaa
atgctaagatatgcttacgctgaacttgaggaatcacgtggagccattcaggctgctaaa
aaggtatatgaaagtctttttggggatggatccaatgcctctgcactatcacatatccag
tttataaggtttttaagaagaagtgaaggagttgaagcagctcgcaaatactttgttgat
gcacgcaagtccccaaattgcacttaccatgtttatgtggcttatgcaatgatggccttt
tgtcttgacaaggatgcaaagatggcgcacaatgtttttgaagcagggttgaaacgcttt
atgcatgagcctggatacatccttgagtatgcagatttcctttatcgtttgaatgacgat
agaaatatcagggcattatttgaacgtgcattgagctcactgccgccagaggaatctgtt
gaggtttggaaaaagttcactcaatttgagcaaacatatggagaccttgccagcatgttg
aaggttgagcagagaaggaaagaagctctttccagaacaggtgatgatggagcatcagag
ttagagagttcgttgcatgatgttgtatcacgctacagtttcatggatctttggccttgc
tcttcaaatgacttggatcatttagcacgccaagagtggctcgcgaggaacatcaataaa
aaacctgacaaacctactcttggtattgaggcaggttctgcagacaagactacttctggt
gtttcatccaatacaaatccgcctgccaaggtagtgtatccagatacttcaaaaatgacg
gtttatgacccgaggcaaattccaggtcctgctgcgcttgcagctccatctgcttcaggc
accttgccctattctggtccatttagcagcaatggacctccaaatgcccttaatgatatt
ttgaaatcgttaccccctgcatttgcagcattcatagcaaatttgccggctgttgaaggt
ccttctcctgatgctgattttgtgatatctgtatgtttgcaaagcaacatccctgcagca
actggaaaatccgggactgcctctctgccattgcagtcaggtgctgctccatctacgagt
gacctctctgattcaagcaaattcaggccgagagacagacagccaggaaagaggaaagac
atggacagacaagaggatgatgaatcaacgactatacaaagccagccccttcctagagat
cttttcaagattcgccaattacaaaaaaatcgtgttggtaattcgtctcgagttactagt
tcatacacaggatcagcatcatatggaagtgcgctttcaggagatctctcgggcagcact
agttga
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