Solanum stenotomum: 125864791
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Entry
125864791 CDS
T08385
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sstn
Solanum stenotomum
Pathway
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125864791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864791
03009 Ribosome biogenesis [BR:
sstn03009
]
125864791
04131 Membrane trafficking [BR:
sstn04131
]
125864791
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sstn04147
]
125864791
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125864791
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125864791
Membrane trafficking [BR:
sstn04131
]
SNARE
SNARE associated proteins
Others
125864791
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125864791
Exosome [BR:
sstn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125864791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_22
AAA_5
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
Vps4_C
ABC_tran
IstB_IS21
Viral_helicase1
AAA_7
NACHT
NB-ARC
AAA_lid_PRS2_C
AAA_24
TsaE
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
125864791
NCBI-ProteinID:
XP_049400821
LinkDB
All DBs
Position
5:62810861..62824713
Genome browser
AA seq
828 aa
AA seq
DB search
MYCSIVWQSQRKRSLWISLASHGMTITPCCKGTKRDFSTAILERKKSPNRLVVDEATNDD
NSVVAIHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCDVPKIRMNKVVRNNLRVR
LGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVR
GGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVIREDENRLDEVGYDDVGGVRKQMAQI
RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS
KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK
SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDL
ERICKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTAL
GTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLF
YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFF
DELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRP
GRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACK
YAIRENIEKDIEREKRRSENPEAMEEDVEDEVPEIKAAHFEESMKYARRSVSDADIRKYQ
AFAQTLQQSRGFGSEFRFSETSTAGTTGTAADPFATSAGGADEDDLYS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtactgcagcattgtatggcaatctcagcgtaaaagaagtctttggatctcactggct
tcacatggtatgactatcacgccttgctgtaaagggacaaagagggattttagtacagcg
attttggagaggaagaagtcgccgaatcgacttgtggtggatgaagcaaccaatgatgac
aactctgttgttgctattcatcctgatactatggagaagcttcagctttttcgtggtgac
actatcttgatcaagggtaagaagagaaaagatacaatctgcattgcccttgctgatgac
acctgtgacgtgccaaagattaggatgaacaaggttgtcagaaataacctaagggttcga
cttggtgatgttgtctctgtgcatcagtgtcctgatgtcaaatatggcaaacgcgtacac
attcttcccattgatgacaccattgaaggagtcactgggaacctctttgatgcttacttg
aagccctattttcttgaagcatacagaccagtgaggaagggtgatctttttctggtaagg
ggaggcatgagaagtgttgagttcaaggttatcgagactgatcctgctgaatactgtgtc
gttgccccagatactgaaatattttgtgagggtgaacctgtgattagggaagacgagaat
agactagatgaggttggttatgacgatgttggtggtgtgcgtaaacaaatggctcagata
agggagcttgttgagctgccactaaggcacccacaactcttcaaatctattggtgtcaag
cctcccaaaggaattttgttgtatggacctcctggatcaggaaagactttaatagcccga
gctgttgcaaatgagactggtgcgttctttttctgcattaatggtccagagatcatgtct
aaattggcgggagaaagtgaaagtaatctcaggaaagcatttgaagaagctgagaagaat
gcaccatcaattattttcattgatgaaattgattcaatagctcctaaacgtgagaagaca
aatggagaggtggagaggaggattgtctcccagcttttgacacttatggatggacttaag
tcacgtgcccatgtaattgttatgggtgccactaatcgccccaatagcattgaccctgcc
ttaagaaggtttggtagatttgaccgggaaatagacattggtgttccggatgaagtgggg
cgtcttgaggtgcttcgtatccatacaaagaacatgaagctcgctgaagaagttgattta
gaaagaatttgcaaagacactcatggttatgttggagctgatttagcagctttgtgtaca
gaggctgcactccaatgcatcagagagaagatggatgtgatagatttggaggatgagacc
attgatgcagagattctaaactctatggctgtgacaaatgagcacttccaaactgctctt
gggacgagcaatccttctgccttgcgtgaaaccgttgttgaagttcccaatgtttcatgg
gaggatattggaggacttgagaatgttaagcgtgagctccaagagactgttcaatatccg
gtggaacatcctgagaaattcgagaagtttggtatgtctccctcaaagggagtccttttc
tatggcccacctggatgtggaaaaactttgctcgcaaaggccattgcaaatgaatgccag
gctaacttcatcagtatcaagggtccagagctgcttaccatgtggtttggagagagtgaa
gccaatgttagagaaatatttgacaaggcccgccaatctgctccgtgtgtcctatttttt
gatgaactggactcgattgccacacagagaggaagtagttcgggagacgctgggggagct
gctgacagagttttgaatcaactccttactgaaatggatggcatgaacgctaagaagact
gtgttcattattggtgcaaccaatagaccagacattattgatcctgcacttctgcgtcct
ggtcgtcttgaccaattgatttatattcctctccctgatgaagattctcgtcaccaaatt
ttcaaggcatgcctgaggaaatcaccgctttctaaggacatcgatctaagagcacttgca
aagtatacacagggctttagtggagctgacattacagagatctgtcaacgtgcttgcaaa
tacgctatcagagaaaacattgagaaagatatcgagagggagaaaaggagaagtgagaat
cctgaagccatggaggaagacgttgaagacgaggtacctgagatcaaggctgctcatttt
gaggaatcaatgaagtatgctaggaggagtgtcagtgacgctgatatccgcaagtaccag
gctttcgctcagacgttgcaacagtccagaggtttcggttctgaattccgattttccgag
accagcactgcagggacaactggaactgctgctgacccctttgcaacttcagctggtgga
gcagatgaagatgacctgtatagttag
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