Solanum stenotomum: 125864835
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Entry
125864835 CDS
T08385
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125864835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864835
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125864835
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_11
DUF1518
Motif
Other DBs
NCBI-GeneID:
125864835
NCBI-ProteinID:
XP_049400876
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All DBs
Position
5:1981365..1986386
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AA seq
471 aa
AA seq
DB search
MMESDLGKLFIGGISWDTDEDRLKEYFSSYGEVVEAVIMRDRNTGRARGFGFVVFVDPVV
AERVVKEKHMIDGRTVEAKKAVPRDDQQIINRNNSSIQGSPGGGRTKKIFVGGLASTVTE
SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRTLFKSFHELNGKLVEVK
RAVPKELSPAPSRSSFMGYNYGLNRANNFLNNYAAQGYNLASVGGYGVRMDGRFSPVAGA
RAGFSQFASPAYGMGVNLDPALSPTFAGASNFSNNLGYGRILNPYLGANSSRYTTPIGYS
TSNNRADSFLSSPTRNLWGNIGLNASASSGGPGSFVGSGSGNYGVFGNNNANWGSLVSVP
GGNSSGYGGGNFRSGENNYGLGSGGLGRNNAATTSSFTASTGAYEGSYGDQFRGASMYGD
RTWQGVSSDADGSGSFEYGLGNPADVSAKDSEDYIGNYSISNRQPNRGIAA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtcagatcttggtaagctattcataggtgggatttcttgggacacggatgag
gatcgtcttaaagaatatttcagttcatatggagaagtggtggaagctgtgatcatgagg
gatcgtaatactggccgtgctcgtggttttggttttgttgtatttgttgatcctgttgtt
gctgaaagagtagttaaggagaagcatatgattgatggacgaacggttgaggcaaagaag
gctgttcctagggatgatcaacaaataataaatagaaacaatagcagcattcaaggatct
ccaggtggtggacgcacaaaaaagatatttgtaggaggcttagcatctactgtcacggag
agtgattttaagacatactttgatcagtttggtacaattacagatgtcgtagtgatgtat
gaccataatactcagaggccaagagggtttggatttataacttatgattcggaggaagca
gttgataggacattgtttaagtcttttcatgaactaaatggtaaactggttgaagtaaag
cgtgctgtaccaaaggagctatctccagcgcctagccgtagctctttcatgggatacaac
tatggactcaatagagccaacaacttcctcaacaactatgctgctcagggttataatcta
gcgtcggttggaggatatggggtcaggatggatggcaggtttagtccagttgccggtgct
cgtgccggtttctctcagtttgcttctcctgcttatggaatgggtgtcaatttggacccg
gcgttgagccccacctttgcaggagcttccaactttagcaataatcttggttatggacgg
atactaaacccatatctcggtgcaaattcaagcagatacactactcctattggatacagc
acaagcaacaatagagcggattcttttctaagctccccaaccaggaatttatggggaaat
attggcctcaatgcttcagcaagttctggtggtccaggttcatttgtaggctctggaagc
ggaaattatggcgtctttgggaataacaatgctaattggggctctcttgtttccgttccg
ggtggtaattcttctggatatggtggtggaaatttcaggagtggggaaaataattatggg
ctgggatctggaggacttggaagaaacaatgctgctacaacctcatcgtttactgcatca
actggtgcttacgaggggtcttacggagatcaattccgtggtgcttcaatgtatggtgat
cgaacttggcaaggcgtgtcttctgatgcagatggttctggttcatttgaatatggtctt
ggaaatccagctgatgtttctgctaaagattctgaggattatatcggaaattatagtatt
tcaaatagacaaccgaatagaggaattgcagcatag
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