Solanum stenotomum: 125864944
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Entry
125864944 CDS
T08385
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125864944
03015 mRNA surveillance pathway
125864944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125864944
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125864944
mRNA cycle factors
P-body specific factors
125864944
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
125864944
NCBI-ProteinID:
XP_049401037
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Position
5:21334628..21349948
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AA seq
508 aa
AA seq
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MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFTFRPAKTSLKHQSYSKAYIDFRN
MEDVTEFAEFFDGHMFVNEKGTQFKTIVEYAPSQRVPKHWLKKDAREGTILKDPAYMEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYVRQKRAVKSGARRSISNGKS
SKSVGGTSSRSPSSTASRRGSEKRTSTTMYVQRDSSKAGNSKDKSYILVPKRGDQQLSVK
SATSAPGSGIDVVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVSSALKNS
PSLSALKQNQRQEASGRIIRSILLKDARQNQSAFQSDQIQDKDMRPPRPPSMQLFQKDTS
GANEDKVVGNEKHVLHIEKQERRSRNRDRPDRGVWAPLRRADSSQASNGSLSSGIPQSSQ
VREFVEGGQGELKNDLPIARGSEFRPIGSGRNSHSSADNGNYKHGGRRGLRDVAGTSIGE
GKPVKRGGTSAYSSLEKQVWVQKSSSGS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtcgttctacgacacttgccgccgacactttctcagtct
atgcttctggagcatgttgattctcgctttgctggtcgatacaattggttcacttttcgc
ccagccaagaccagcctgaagcatcaaagctattcaaaagcctatattgactttcggaat
atggaagatgttactgagtttgctgagttctttgatgggcacatgtttgtgaatgagaaa
ggcactcagttcaaaaccattgtcgagtatgctccttcccagcgtgtcccaaagcactgg
ctcaagaaggatgcccgtgaagggaccatattgaaagatcctgcatatatggagttcctt
gaatttcttgcaaagcctgttgagaatcttccgagtgctgagatacaattggagagaaag
gaagctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
gtacgtcagaaaagagctgtgaagagtggagctcggaggtctatctctaatggaaaatca
agtaaaagtgttggtggcacaagctcaagaagtcctagctcaactgcatctagacgaggc
tctgaaaagagaacttctacaaccatgtatgttcaacgggacagttctaaggctggcaac
agtaaggacaaatcctatattctagtgccaaaacgtggtgatcagcagctctctgtcaag
tctgctacttctgctcctggatctgggattgatgtagtggaaggggaaattggtcgttca
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcactagctcaacagaatgtgtcatctgctctcaagaattca
cctagtttatctgctctgaaacagaaccagcgccaagaggcaagtggcagaatcatcaga
agtattcttctaaaggatgctcgacagaatcagtcagcatttcaatcagatcaaatacag
gataaggacatgagacctcctcggccaccaagtatgcagttgtttcagaaggatacaagt
ggagctaatgaggataaggttgttggaaatgaaaagcatgttctccacattgagaaacaa
gaaagacgttctaggaatagagatcggcctgatcgtggtgtttgggctcctcttcgtcgt
gctgatagttcacaagccagtaatggatctttatcatctggtattcctcaatcttcccaa
gtgcgggagtttgttgaagggggccaaggagaattgaaaaatgatctaccaattgcacgc
ggtagtgagttcagaccaattggaagtgggcgtaattctcactcttctgcggataatggt
aactataaacatggtggtcgtcgtggtttgagggatgtggctggcacttctattggggaa
ggaaaacccgtgaaaaggggaggcacttctgcttacagttctcttgagaaacaagtgtgg
gttcaaaagtcaagttctggttcttag
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