Solanum stenotomum: 125864972
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Entry
125864972 CDS
T08385
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like
KO
K12133
MYB-related transcription factor LHY
Organism
sstn
Solanum stenotomum
Pathway
sstn04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
125864972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sstn03000
]
125864972
Transcription factors [BR:
sstn03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
125864972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
DUF5134
Motif
Other DBs
NCBI-GeneID:
125864972
NCBI-ProteinID:
XP_049401077
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All DBs
Position
5:1109706..1135229
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AA seq
764 aa
AA seq
DB search
MDPYSSGEELVVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFTKLEKEALTKGVPISQALDIEIPPPRPKRKPSNPYPRKTSVAVPSLQVGAK
DGKFSTPFSSICEERNLFDLEKEPITEKAGGNEKLGNVQETQNKKNCSQGFTLFKEGVSA
ASMSSGKSLQTHVAPTDACAFSESVPVTKGEVNHDIANKSFLTVESKEHQQSEILDIRQS
FQGNSSCNTFDGGKSCQSSEKLAQGEKKHSPSQPDHLGEFSRNDMQVLHNYPRHVPVHIL
DGTNGSQISPDMFNHESTSQQIGGVPALPNLYSNPASSATSEYHSNSPQSSIHQSFSCFH
PIFTPIRDPDDYRSFLQLSSTFSSLIVSALLQNPAAHVAASFAASFWPYANMERPTDSPT
DNTASQINSAPGMAAIAAATVAAATAWWAAHGLLPLCSQFQSSFTCVPTSATSMQVDACQ
PRVDKNEGREGTHNSPHAQEPVPECSEALQEQQSGSKLPPSPSSESEESEGRKLQTGLTA
TDTEQGAAVTKINEPNTEKGGKQVDRSSCGSNTPSSSEIETDALEKDEKGKEEPQESNIN
LLAGEAAIRRCRNFISPTESWKEVSEEGRIAFQALFTREVLPQSFSPSLDLKNKGKIILE
KFKQRPDEKVQCGPQLDLNDLASNICSSHQTMKDTVLLIGNKEDVEKCLPMIELGQVRLK
ARRTGFKPYKRCSLEANDSRVTSSNCQDEEKSSKRLRLEGEAST
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggacccttactcctcaggggaggaacttgttgttaagacaaggaaaccttatacaatc
actaagcaacgagagcgatggacggaggaggagcacaataggttcctagaagctttgaaa
ctctatggacgcgcttggcagcgcatagaagaacatataggaactaaaactgccgtgcag
atcagaagtcatgcacaaaagttttttacaaagttagaaaaggaggctcttacaaagggg
gtcccaataagtcaagcacttgacattgaaattcctcctccacgacctaaaaggaaacca
agtaatccttatcctcgtaagacgagtgtagcagttccctcattacaggtgggagcaaaa
gatgggaaattttcgacacctttttcttccatctgtgaggaaaggaacttatttgacctg
gagaaagaaccaattactgagaaagctggcggaaacgagaagctgggaaatgtacaagaa
acccagaacaagaaaaattgctcccaagggttcactcttttcaaagaaggtgtttctgca
gcctctatgtcttcaggaaagtccttgcaaacacatgtggcaccaacagatgcatgtgct
tttagtgagtctgtgcctgtcaccaaaggagaggttaaccatgatatagcaaataaatct
tttctcactgttgaatccaaagaacatcaacagtcagaaatactcgatatcagacagtcc
tttcaaggtaacagctcctgtaacaccttcgacggggggaaatcttgccagtcgagtgaa
aagttggcacaaggtgagaaaaaacattcaccgagtcagccagatcatttgggggaattc
tcaagaaatgatatgcaagtgctacacaactatccaagacatgtgccagtgcatattctt
gatggaacaaatggttctcaaatatccccagatatgtttaatcatgaatctacgagtcag
cagataggtggggtcccggcgctcccaaatttgtattctaatcctgcttcatccgccaca
tctgagtaccatagtaattctccacagtcatccattcatcagtcattttcttgtttccac
cccatcttcacccctattcgtgatccagatgattaccgatcgtttcttcaattatcctcc
actttctccagccttattgtttctgctttattgcaaaacccagcagcacatgttgcagca
agttttgccgctagcttttggccttatgcaaacatggaacgtccaacggattctccaaca
gataacaccgctagccagattaactcagctcctggtatggcagcaattgctgctgccaca
gtagcagctgcaactgcatggtgggcagcccatgggctcttaccattgtgctctcaattt
caaagcagttttacctgtgttcctacatcagcaacatcaatgcaagtggatgcctgtcaa
cctagagtagacaagaatgaaggaagagagggaactcataattctccccatgctcaggaa
cccgtcccagaatgctctgaagctttgcaagaacaacagtcaggttctaaattgccacct
tctccatcatcagaatcggaggagagtgaaggtaggaagctacaaactgggttaacggcc
actgatactgagcaaggagctgcagttactaaaattaatgagccaaacacagaaaagggc
gggaagcaggtagatcgctcttcctgtggatccaacacaccttcaagtagtgaaattgag
acagatgctttagagaaggacgagaagggtaaagaagagcctcaagaatctaatattaac
cttcttgctggagaggctgcgattcggcgttgtagaaatttcatcagtccaactgaatct
tggaaagaagtctctgaagagggacggatagctttccaggctcttttcaccagagaagtg
ttgcctcaaagtttttctccttcacttgatctgaaaaataagggaaagatcattcttgaa
aagtttaagcaaaggccagacgagaaagttcaatgtggaccgcagttagaccttaatgat
ctggcatccaatatctgttccagtcaccaaacaatgaaagacactgtgttattaattggc
aacaaagaagatgtagaaaaatgcctaccaatgatagaacttggacaagtaaggttgaaa
gctcgccgtactggatttaaaccttacaagaggtgctcattggaggcaaatgatagcagg
gtgacaagttcaaactgtcaggatgaagaaaaaagctcgaaaagacttcgattggaagga
gaagcttctacttag
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