Solanum stenotomum: 125865186
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Entry
125865186 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125865186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125865186
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125865186
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
125865186
NCBI-ProteinID:
XP_049401376
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All DBs
Position
1:complement(23545045..23549537)
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AA seq
1072 aa
AA seq
DB search
MDSGDGSGPKQRRTRQQFLKYCVDFTEKRNRSCQNGNLTPSSSTCSVNIGKEGVSCGRKR
KMAVSEDARKLRKGKKKVDNGRRSKFSPGTCESIMERIFVEEIPDDDVTDDSEDDSDDDD
TDDSEDDSDDDDTDDSEDDSDDVVIIEEEEGSNMLNAKDQEVVSSTSSMCGRTPVKSVEV
YTDSTSSSESESESDSSQYDDVISDFDDTESEDETNEEGEKESNEGLVPELVVESEKQKK
GGAYVLRARSLSMSKKKKLNNGNDSSSPILLTDEEEEFDDSGSDSEESKSEEDCAVDDSV
KNVVQKDVVRKDRRTGKKILEDSEFMMFVVDSIINVDDHDKLTPFEEKEQVPVKETLPLV
FRFEDEDEPPPPEKEEWEKEVENLFAEMQMCILESDIGFTNPSVSPMQSGDLTNCQMGNH
QLVLDEQIGLVCKVCSYVHLEIKYIFPSFAHRTRRRFERKHLGQSPSLLDVGGFRFSDSS
AVQDSMINEEGTVWDLVPPSAKSTMYPHQHGGFEFMWKNVAGDINLERLRQPLSDSKGGC
IISHPPGTGKTRLTIVFLQSYLKLFPKSRPVIIAPSSLLLNWEAEFQKWEVDIPFHNLNS
KDFSLQEDEATVSVFRCLSHAGKRNPHLIRMVKLGSWVKGKSVLGISYDLFRILTGDDGD
GYAKPIREILLKYPGLLVLEEGHTARNEQSLVWKALKKVETEKRIVLSGTPFQNNIKELY
NTLCVVSPKFAADLEQKWASLSSSIDKNARALEELRDIISPLVHKCSENVKKVSLPGIRD
TVIHLKPTDLQKELLRRIPENPSSFYEQNLVSLISVHPSLVAKRKEFSDLESQLTERGCR
LDPDTGVKMKFVVELIRLCGGRKERVIIFSQLLDPLSLIKEQLNSLFGWTLGREILYMDG
KLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLIGASRVVLLDVLWNPSVEQQAIS
RAYRNGQTKFVHVYCPVTSKWEVDKIEQQTRKKYHSDVLLSRNHEAKMDPSCSVSEDNIL
ESMVEHEGLRHIFGKLSHAPRVVPPTTGLDLVTNLQNQVVRLVCAFFWFAGT
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggactcaggggatggctctggtccaaaacagaggagaactagacaacagtttttgaaa
tattgtgttgattttactgagaaaaggaacaggtcttgtcaaaatggtaatcttactcca
tcttcttcgacttgttctgtgaatattggaaaagagggtgtgagttgtgggaggaaaaga
aaaatggcagtttctgaagatgcaagaaagttaagaaaagggaaaaagaaagtggataat
gggaggaggagcaagttcagtccaggaacttgtgagtctatcatggaacggattttcgtc
gaggaaatacctgatgatgatgttacggatgattcggaggatgattctgatgatgatgat
acggatgattcggaggatgattctgatgatgatgatacggatgattcggaggatgattct
gatgatgttgttatcattgaagaggaggagggtagtaatatgttgaatgcaaaagatcag
gaggttgtttcatctacctcaagcatgtgtggtaggacaccggtgaaatcggtggaagtg
tatactgatagcacctcatcttctgagtctgagtctgagtcggattctagccaatatgat
gatgtaataagtgattttgatgatacggaatcagaagatgaaacgaatgaagaaggagaa
aaagagtcgaatgaggggttagtacctgagcttgttgttgagagtgaaaagcagaagaaa
ggcggagcatatgttcttcgtgcgcgttcactatctatgtccaaaaagaagaagttaaac
aatggaaatgatagtagtagcccaattcttcttactgatgaggaggaggagtttgatgac
tcggggtctgatagcgaggagtctaaatctgaagaggattgcgcagttgatgactcggtg
aagaatgttgttcaaaaggatgttgttcgaaaggataggaggactggaaagaagattctt
gaagattctgaatttatgatgtttgttgttgattctatcataaatgttgatgatcatgat
aaacttactccttttgaagagaaggaacaggttcctgtcaaggaaacacttcctttagta
tttcggtttgaagacgaggatgaacctcctccccctgagaaagaagaatgggaaaaggaa
gttgaaaatctttttgctgaaatgcagatgtgtatcttagagtcagatattggctttaca
aatccatctgtttcgccgatgcagagtggagatttaactaactgtcagatggggaaccac
caacttgttctagatgaacaaattggactcgtctgtaaagtttgttcctatgtgcatttg
gagatcaagtacatcttcccttcttttgctcatagaactcgacggaggtttgaaagaaaa
catttaggacagtcgccatcactcttggacgttggtggcttcagattttctgattcttct
gcagtccaagattctatgattaatgaagaaggaactgtgtgggatttagttcccccaagt
gccaaatcaacaatgtatcctcatcaacatggtggatttgagtttatgtggaaaaacgtt
gctggagatataaatcttgaaaggctgagacagcccctatctgatagcaaaggaggatgc
ataatctcacatccacctggcaccggtaaaacccgtctcaccatagtatttcttcagtca
tatttgaagctgtttccaaagtctcgacctgtaatcatagctccttccagcttgctgctt
aactgggaagctgagttccagaaatgggaggtggatattcccttccacaacttgaacagc
aaagatttctctttacaggaagatgaagctactgtgagtgtctttcgctgtttatcccat
gcgggaaagagaaatccacaccttatacgaatggtgaagctgggatcatgggttaaaggt
aagagtgttttggggatcagctatgacttgttcaggattcttactggagatgatggagat
ggttacgctaaaccgattagagaaatccttcttaaatatcctggtcttctggtccttgaa
gaagggcatactgctcggaatgagcaaagccttgtctggaaagctttgaaaaaggttgaa
acagagaagcgcatagttttgtctggaactcctttccagaataacatcaaggagttatac
aacactctctgtgtagtcagtccaaagtttgctgcagatttggagcagaaatgggcttct
cttagcagttccattgacaagaatgcccgagcattggaagagcttagggatattatttca
ccacttgtccataagtgtagtgaaaatgtaaagaaggtaagccttccgggtataagggac
actgtaattcacttgaaacccacagatttgcagaaggagttgcttagaaggattccagag
aatccaagctccttttatgaacaaaatctggtgtctcttatctctgttcatccttcatta
gtggccaagaggaaggagttctctgacttagaaagtcagctaacagaaagaggctgtcgg
ttggatccagataccggagtaaaaatgaaatttgttgttgagcttatcagactttgcggt
gggcggaaggaaagggttataatatttagccagttacttgatcctctaagcctgatcaag
gagcaactcaattctctctttggctggactttaggtcgggagattctctatatggatggg
aaacttgacgtgaagcagcggcagatatctataaattctcttaatgaccctaagagtgat
gtaaaagtgcttcttgcatccataaaagcctgttcagaaggaataagtctgataggggcc
tcaagagtggttttgcttgacgttctctggaatccctcagtagaacagcaagccatcagt
cgagcttacaggaatgggcagactaaatttgtgcatgtttactgtccagtaacatcaaaa
tgggaggttgacaagattgaacagcagacgagaaaaaagtaccattcagatgttcttttg
tctaggaatcatgaagccaagatggatccttcatgttctgtgtcagaggataacatacta
gaatccatggttgagcatgagggcctccgtcatatttttggaaagctctctcatgcacca
cgtgtggtgcctcctactacaggccttgatcttgtaaccaatctccaaaaccaagtagtt
aggttagtatgtgctttcttctggtttgctggtacatga
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