Solanum stenotomum: 125865960
Help
Entry
125865960 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125865960
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
sstn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125865960
03460 Fanconi anemia pathway
125865960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125865960
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125865960
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125865960
FA (Fanconi anemia) pathway
Downstream FA components
125865960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
DUF4230
zf-CCHC_4
Cep192_D6
Motif
Other DBs
NCBI-GeneID:
125865960
NCBI-ProteinID:
XP_049402189
LinkDB
All DBs
Position
5:complement(59678764..59696125)
Genome browser
AA seq
1282 aa
AA seq
DB search
MKNFKRAPPPPPPSAATLGPKPSKHVVHIGGIPVEFPYQPYGTQLAFMNRVIVTLDRAHR
DGHSHALLESPTGTGKSLSLLCSTLAWQQNCKSKNRYSNFTHSKPDPQALADPIGHGGGF
IPETQPSGNPDTAPPAASNGTKKKKAAPTIFYASRTHSQISQVIREYRKTSYRVPMAILA
SRKHYCTNVNVRGADNIDEKCKLLLKDQEAGCSEFKNTHKVKGHPSIQKGGCHEAHDIED
LVKVGQIVKGCSYFGARSMADDAELVFCPYNYIINPVVRRAMEVVIKGAIIILDEAHNIE
DICRDAGSVDVEEDILLQLQMELEQLIQSDTMIYQPLVEMTQDIRSWISRKKNTLEKHGF
QHYASCWTGDKALKELQEANVTKQCFPILQDCASKAIRAASEAEPGTDHLSGMAASVLEG
LVSSLSYFFSGDGLHVCDYQLALQRYVKKSPGTAVGSWTQTFSLWCLNPAVVFREIADSC
LSVILTSGTLSPMDSFSSELGVTFGTSLEAPHAIDVESQLWAAVISRGPRNYPLNASFKT
ADSYAFQDALGTSLEEICKIVPGGCLAFFPSYKLMDKLSSRWKETGQWARLNARKPIFTE
PRGGQEEFESVLKGYYSSINQREKLVMGRKKKAKGSALSDGTPLEVSNENKKEGAAFLAV
CRGKVSEGIDFSDEKARVVIIVGIPFPNINDIKVDLKKKFNNTYKSSKNLLSGSEWYCNQ
AFRALNQATGRCIRHRFDYGAVIFLDERFCEARNRAYISKWLRNSIRHHSGFDKSMEELK
SFFRDVKERVGKAASSIQSSVVDVEENAFVTKSIRIRQKNQEFSTSDVKGLKEEENGALI
CQKAPLLCQSSCIDTMYNTSSTKMRIDAPHLMLSDDEDSDGRRGYIDLECDSAFSSRFSG
DPLIVSHAADPQLTIVKETPATDDIIHTSSPQSFSKDEYSSSTIIQASSDLSDHLANHPT
TQQKAELGCKSPCLTITPQKDVYTKANMISFDVESPINSSVNSHVGKRIKRLDLSSIVHL
DAEEFDTQMTKIPMHDSSTCRSRKIKDANQMIDSSSRISQLDKELEKSKSPWSSVLNNCE
ISVVQSNLAMYERLQIFCSLCNNPLGLPQNNLFVMCSRTLSTKTHLKSLWKGLPETPDPS
RHSIPILIANFSSVDQRIYETISDNLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQVM
ASDASNVQLLNKVLLYCDCLVIKEPEASRKELSPSNNSSSDRGLNSIESFTFTPEQQNLG
GWRTTKSKMRLPKRSISSSAQR
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttaaacgagcaccaccgccgccgccgccgtcggcggcaacgctaggtcct
aaaccgtcaaagcatgtggtgcatataggtggtattccggtggagtttccttaccaaccc
tacgggacacagttagctttcatgaatcgagtcattgtgacacttgatcgagcacatagg
gatggacattctcatgcgctgcttgagtctcctaccggtactggaaagtcgctttccctt
ctttgctcgactcttgcttggcagcagaactgcaagtcgaagaatcgttattctaatttt
actcactctaaacccgatccgcaagccctagctgatcctattggtcacggcggcggattt
attcctgaaacgcagccctcaggcaacccggacacagcgccacctgctgcaagtaatggg
acgaaaaagaaaaaagcggcaccaaccatcttttatgcctcgaggacacattcacaaatt
tctcaagtgattcgggaatacagaaagacaagttatcgggtgccaatggctatactggct
tcacgaaaacactactgtacaaatgtgaatgtacgaggtgcagacaacattgatgaaaaa
tgtaagttgttattaaaggatcaggaggctggatgctcagaattcaaaaatactcataaa
gtaaaaggtcatccatccattcagaaaggagggtgccacgaggctcatgatattgaagat
cttgttaaagttggacaaattgtcaaaggctgttcttactttggagcacgttccatggct
gatgatgcggagttagtgttctgtccatacaactatatcatcaatccagttgttagaaga
gcaatggaagtagttataaaaggagccatcattattctcgatgaagcccacaatatagaa
gacatttgtcgtgatgctggtagtgttgatgttgaggaggatattttgcttcagttgcag
atggaactggagcaactcatacaatctgatacaatgatttaccaacctttggtagaaatg
acacaggacataaggagttggatttctaggaagaaaaatactttagaaaagcacggcttc
caacactatgcctcatgttggactggtgacaaggccttgaaagagctacaagaagccaat
gtgacaaagcaatgctttccaattttacaggattgtgcctcgaaggccatcagagctgcc
tctgaagctgagccagggacagatcatttgagtggcatggcagcatctgtattagaagga
ctagtctcctcactcagttacttcttctcgggagatgggcttcatgtgtgtgattatcag
ctagctttacaacgctatgtcaagaaaagtcctggaactgctgttggtagctggacacaa
acttttagtttgtggtgcctaaatccagccgttgtgttcagagaaattgctgattcttgt
ctatcagtgatcctaacatcagggactctatcaccaatggattcattttcctctgaactt
ggtgttacttttggtacttctctggaagctccacatgctatagacgttgaatcacagtta
tgggctgctgtaatctcgagaggaccaagaaattatccgttgaatgcaagtttcaaaaca
gctgattcatatgcttttcaggatgcacttggcacatctttggaggaaatatgcaagatt
gttccaggtggttgtctagcattttttcctagctataagctgatggacaaactaagcagt
cgctggaaagaaacaggtcaatgggcccgacttaatgctcgaaaacccattttcactgag
ccaagagggggtcaagaagaatttgaatcagttttgaagggttactacagttctattaac
caaagggagaaactagtgatgggaagaaagaaaaaggcaaaagggtcagctcttagtgac
ggtactccacttgaagtttcaaatgaaaacaagaaagagggagctgcttttcttgctgtt
tgtcgaggaaaggtttctgaaggcatagacttttctgacgagaaggctcgtgtagttata
attgttgggattccctttccaaacataaatgatataaaagtcgatcttaaaaagaagttc
aacaatacttataagtcatccaaaaatcttctgagtgggagtgagtggtattgtaatcaa
gccttcagagctcttaaccaggctacaggtcgttgcattcgccacagatttgactatgga
gctgtgatctttttagatgaacgtttctgtgaggcaaggaatagagcttatatttcaaag
tggttgcggaattcaataagacaccacagcggctttgacaagtcaatggaagagctgaaa
tcctttttcagagatgtcaaagagcgtgttggcaaggcagccagttccatacaaagttct
gttgttgatgttgaagaaaatgcttttgtcaccaagagtataagaatcaggcagaaaaac
caggagttcagcacttctgatgtgaaagggcttaaggaggaagaaaatggtgcattgatt
tgtcaaaaagctccgctcctatgtcaatcttcatgtattgataccatgtataatacatcc
tccactaaaatgagaattgatgcccctcatttgatgttaagtgatgatgaggattctgat
ggtcgcagaggttacattgatttggaatgtgattcagcattttcatctaggttctccgga
gatccattgatagtttcacacgctgctgaccctcaattaactattgtaaaagaaactcct
gctactgatgacattattcacacttctagtcctcaatccttctccaaggatgaatattct
tcctccaccatcattcaagcatctagtgacctttcagatcacttggcaaatcatcctaca
actcaacaaaaagctgagttgggttgtaaatctccctgtttgacgattactcctcaaaaa
gatgtctatacaaaagcaaacatgatatcatttgatgttgaatcgccaattaactcgagc
gtcaattctcatgtcgggaaaaggataaaacgtctggatttgtcatccatagttcatctt
gatgcagaagaatttgatactcagatgaccaagattcctatgcatgatagttctacatgt
agatcaaggaagattaaagatgcaaaccagatgattgattctagttccagaattagtcag
ttagacaaggaactggagaagtccaaatctccttggtcatcagtcctgaataactgtgag
atatcagtcgtgcagtctaatcttgctatgtacgaaagactacagatattttgctcactt
tgcaacaatccactagggcttcctcagaataatttatttgttatgtgctcacgaactttg
tcaacaaaaactcacttaaaatctctttggaaaggtctaccagaaacccctgatccgagc
agacatagtatacctattctcatagctaacttttcgtctgttgatcaacgcatctatgaa
acaatcagtgacaatttatctgttcagggaatttggtgcaaagaagatggctgtgttttc
aaaactattttctgtcccttctgtgtaaattccagacattgtcttggtgtacaagtcatg
gcttctgatgcgtctaatgtccagttactaaataaggtgctgctttattgtgattgcttg
gtgataaaggagcctgaagcatcaagaaaggaattatctccatccaacaattcaagctct
gacagaggtcttaattccattgagagtttcacgtttactcctgaacagcagaaccttgga
ggatggagaactacaaaatccaagatgcgattaccaaagaggagcatctcatctagtgca
cagaggtga
DBGET
integrated database retrieval system
