Solanum stenotomum: 125866071
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Entry
125866071 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125866071
KO
K12586
exosome complex component RRP43
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125866071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125866071
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125866071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
eIF2_C
Motif
Other DBs
NCBI-GeneID:
125866071
NCBI-ProteinID:
XP_049402319
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All DBs
Position
5:60187033..60193539
Genome browser
AA seq
302 aa
AA seq
DB search
MAAANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASAD
GSALAKIGSTTMLAAIKMEVMKPTVECPDEGSIAIEFHMPPICSPLVRPGRPVEAASVIS
KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFLHLNIP
VVSLNDDGQIVLVSEDTVRLKLEKPVNTEKRKLKLNALPFSLTCILHKNYILADPTAEEE
SIMETIVTVVLDSSYQLVSLNKPGGPVLSHTSVIQDCIALARRRVKELQSVLNEAISDME
VD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccaatggctcaagtgacttgtcttcagagatggaggtggatgcatttaga
cgtctttttcctttgcgctatcatgaacatcatcttcttaaatctgtccgacctgatgcc
cgaaagcttggaagtgctagagatacaacacttgcacttggtgctgttgcatctgccgat
ggatccgcactggcgaagattggctccactacgatgctggctgccatcaaaatggaagtc
atgaaaccaacagtggaatgtccagatgagggatccatagctatcgaattccacatgcct
cctatttgttctcccctggttcggcctggtaggcctgtggaagcagcatctgtaatttca
aagcagctgtcagacactatcttgagttctggcatgattgacttaaaagagttgtgcttg
gttggaggaaaagctgcttggatggcctacctggacatatactgtttggatgctgacggt
gccctgtttgacactgcattactatctgcagttgctgcctttttgcatttgaacattcca
gtggtttctttgaatgatgatgggcaaatagtccttgtttctgaggacactgtccgattg
aaattggagaagcctgtgaatacagagaaaagaaaactcaaattgaacgctctaccattc
tccttaacatgcatacttcacaagaactatatcctcgcagatcctacagcagaggaagaa
tctataatggaaacaattgtaaccgtggtattggattcgtcttaccagcttgtttccctt
aataaaccaggtggaccagttctttcccatacatcagttatccaggattgcattgcactg
gcaagacgcagagtgaaggagcttcagagtgtcttgaatgaagctatttctgatatggag
gtagactga
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