KEGG   Solanum stenotomum: 125866329
Entry
125866329         CDS       T08385                                 
Name
(RefSeq) uncharacterized protein LOC125866329
  KO
K12828  splicing factor 3B subunit 1
Organism
sstn  Solanum stenotomum
Pathway
sstn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125866329
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sstn03041]
    125866329
   03036 Chromosome and associated proteins [BR:sstn03036]
    125866329
Spliceosome [BR:sstn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    125866329
 Complex B
    125866329
 Complex C
   U2 SnRNP specific factors
    125866329
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    125866329
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N
Other DBs
NCBI-GeneID: 125866329
NCBI-ProteinID: XP_049402635
LinkDB
Position
5:61061675..61065968
AA seq 1259 aa
MDDEIQKTQEERKKMEQQLASMNTVTFDTEFYSSNKFEGYEKSIPVNDDDDTFDTENEVA
RKMASFTAPKQFFKEVPRGAGEEDEPSGFNKPSKIIDREDDYRRRRLNRVISPERNDPFL
DKTPGPEVRTYADVMREEALKRQKEELMKEIAKKKKEEQEKAADKKEEVEKPAQKRRNRW
DQSQDEGGAKKAKAGSDWDQPDSTPGIGRWDATPTPGRVGDATPSVKKNRWDETPTPGRV
ADSDATPAGGATPGATPAGMSWDATPKLAGLATPTPKRQRSRWDETPATMGSATPMSGAT
PAAAYTPGVTPVGGVELATPTPGAINLRGPVTPEQYNLMRWEKDIEERNRPLTDEELDSM
FPQEGYKILDPPASYVPIRTPARKLLATPTPIGTPLYSIPEENRGQQFDVPKEMPGGLPF
MKPEDYQYFGSLLNEEDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREF
GAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP
FLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITA
LSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAVYASYYT
KEVMVVLIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRQDILPEFFRNFWVRRMALD
RRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDS
RLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNNKSA
KVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM
LKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAV
VLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPILEDDENNVYSRPELNMFI
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggatgatgagattcagaaaacgcaagaggagaggaagaagatggagcagcagctcgct
tctatgaatacggtgacttttgatactgaattctatagttcgaataaatttgagggttat
gagaaatctattccggtgaatgatgatgatgatacttttgatacggagaatgaggttgct
agaaagatggcatctttcactgcgccgaaacagttttttaaggaggttccacggggtgca
ggggaagaggatgagccgagtgggtttaataaaccgagtaagattattgatagggaggat
gattataggaggaggaggttgaatagggtcatttctcctgagaggaatgatccttttttg
gataagactccagggccggaagtgaggacgtatgcggatgttatgagggaggaggctttg
aagaggcagaaggaagagttgatgaaggagattgcgaagaagaagaaggaagaacaggaa
aaagcagcggataaaaaggaggaggttgagaagccagctcagaagaggaggaataggtgg
gaccaatcgcaggatgagggtggtgcgaagaaggcgaaagctggttcagattgggaccag
ccggactcaacacctgggattggaaggtgggatgcaacccccacacccggcagggtcggt
gatgcaacaccctctgtcaagaagaatagatgggatgagacacctacacctggtagggtt
gctgattcagatgctacccctgctggtggtgctactccaggtgcaactccagctggtatg
tcttgggatgctacaccaaagcttgcaggtcttgctacccccacgcctaaaagacagagg
tcaaggtgggacgagactccagctactatgggaagtgcaactcccatgtcaggtgctacc
ccggcagcagcttatacaccgggtgttactcctgttgggggtgttgaactagctacacca
acccctggtgccattaatttgcgtggtccggttactcctgaacaatacaatttgatgagg
tgggagaaggacattgaagagagaaatcgacccttaactgatgaggagcttgactcaatg
tttcctcaggaaggatataagattttggatcctccagcatcctatgttcccattagaaca
cccgccaggaagcttcttgccacaccaactcctatagggacacctctgtactctattcca
gaagaaaatcggggtcaacagtttgatgtaccaaaagaaatgccaggtggtttgccattt
atgaagcccgaggattaccagtattttggttccttgttgaatgaggaagatgaagaggag
ttgtctcccgatgaacagaaggagcgaaaaattatgaagcttttgctcaaggttaaaaat
ggcactccccctcagaggaaaactgctttgagacagctcactgataaggccagagaattt
ggtgccgggcccttattcaatcggattctgccattgctcatgcaacctacactggaagac
caagaaaggcatttgctggttaaggttattgatagggtactctataagttggatgaattg
gttcgtccatatgtgcacaagattcttgtcgtgattgaacctctgttgattgatgaagat
tattatgctcgtgtcgaagggagggaaatcatatctaatcttagtaaggcagctggtttg
gcgactatgattgctgccatgcgtccagatattgacaacattgatgaatatgtcaggaac
acaactgctcgagctttcagcgttgttgcatctgcacttggtattcctgctctgctgcca
ttcttgaaagccgtttgtcagagtaaaaaatcttggcaggctcgtcatacaggtattaag
attgttcagcagattgctattcttattggttgtgctgttcttccacatttgaggtctttg
gtggaaattattgaacatggtcttaatgatgagaaccagaaagtcaggaccattacagct
ctttctctggctgctctagctgaagctgctgcaccatatggtattgagagttttgattct
gttttgaagcccttgtggaagggtattagatcacatcgtggcaaggttttggctgccttt
ttaaaggctataggtttcatcattcctcttatggatgctgtatacgccagctactatacc
aaagaagttatggttgtccttattcgtgagtttcaatcacctgacgaggagatgaagaaa
attgtgctgaaagtggtgaagcagtgtgtcagtacagaaggtgtggagccagattacatt
cgacaagacattcttccagagttcttcagaaacttttgggttagaagaatggctttggac
cgcagaaactacaagcaacttgttgaaaccactgtggagatagcaaacaaagttggtgtt
gctgatatagttgggagaattgttgaagacttgaaagatgagagtgaaccatacaggaga
atggtcatggaaactattgagaaggtggttgcaaatcttggtgcatctgatattgattct
cgactagaagagctgttaattgatggtatcctttatgccttccaagagcaaaccagtgac
gatgccaatgtgatgcttaacggatttggtgctgttgtaaatgcccttggccaaagagtt
aagccataccttcctcagatttgtggtactataaaatggcgactgaacaacaagagtgcc
aaggtgagacagcaagctgcagatctgatatccagaattgcagtagttatgaagcagtgt
ggggaagaacaactaatgggccatcttggtgttgtcttgtacgagtacttgggagaagaa
tacccagaggttttaggatctatactgggggctctcaaggctattgtgaatgttattggt
atgactaaaatgactcctccaattaaggacttgcttcctcggctgacccctattttgaag
aatcgtcatgagaaagtccaggagaattgtattgaccttgttggtcgaattgcagaccgt
ggtgctgaatttgttcctgcaagggagtggatgagaatttgttttgagcttcttgagatg
cttaaagcgcacaagaaaggtatccgccgagcaacagtgaacacatttgggtatattgct
aaagccattggacctcaggatgtgcttgcaacattgttaaacaatcttaaggtacaggaa
cgtcagaaccgtgtctgtaccactgtcgcaattgctattgttgcagaaacctgttctccc
tttacagtcttgcctgccttgatgaacgaatatcgcgtgcctgagcttaatgtccagaac
ggtgtcttgaaatccctctccttccttttcgagtacattggagaaatgggcaaggattat
atatatgctgtaactccattacttgaagatgctcttatggacagagatttagtacacagg
cagactgctgcctctgctgtgaagcacatggctcttggtgttgctggtcttggatgtgaa
gatgcacttgtccaccttttgaactatgtctggccaaacatttttgagacgtctccacat
gtgatcaacgcagtcatggaagccatcgaaggaatgagggttgcactgggagcagccgta
gtccttaactattgtctacagggattgttccatccagcaaggaaggtcagagaagtttac
tggaagatatacaactccctctatatcggtgcccaggatgcccttgtagcttcttatcct
attctggaagatgatgaaaacaatgtctacagtaggcctgagctgaacatgttcatttag

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