Solanum stenotomum: 125866417
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Entry
125866417 CDS
T08385
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23 isoform X1
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125866417
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
125866417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
125866417
NCBI-ProteinID:
XP_049402766
LinkDB
All DBs
Position
5:53733891..53804519
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AA seq
1608 aa
AA seq
DB search
MLRVPVSTPSSGEMEHNNTHQLRSRSHHQFHPSRPAILDLFNLYLGLKNSGQKSDDSIRE
PPNKTQKRVTALNRELPPRNEQFLLDFGQLQSQFTDKEQLSAVTESVLISLVIHCSSHAP
RAEFILFAICSLSSIGFINWDTFLPSLLSSVSSTEISASQANLPSGAVSSANLTSGLLPS
STTVASTSIFHSSNPASPLPTVHGIGSPLHSAAEPSSSAALSPMKSSDVNGTSQQSIAKV
NVLSKDNATSSLRQLCCKIILTGLDSNLKPVTHAEVFHHMLNWLINWDQKLHGVDELDSM
KYWKPDKALIKWLHSCLDVIWLLVENDKCRIPFYELLRSGLQFLENIPDDEALFTLILEI
HRRRDMMAMHMQMLDQHLHCPTFGTPRLLPQATANSSGEAVANMRYSPITYSSVLGEPLH
GEDLAASIQKGSLDWERALRCLKHALRNTPSPDWWRRVLLVAPCHRVHAQAPTPGAVFTS
EMVCEAVIERIVELLKLTNSEISCWQEWLIFSDIFFFLMKSGCVDFVEFVDKLVLRLQEG
DQQILRTNHVTWLLAQIIRVELVMNALNTDSRKVETTRKILSFHKEEKSSDPNNPQSILL
DFISSCQNLRIWTLNTATREYLNNEQLQKGKQIDEWWRQVNKGERMMDYMNLDDRSIGMF
WVVSYTMAQPACETVMNWLTSAGVTEHLPGPNLQSNERLMVMREVSPLPISLLSGLSINL
CLKVAFQMEESMFSGQAVPSIAMVETYCRLMLISPHSLFRSLLTHLTSRNPTTLTKPGNT
ILVFEILNYRFLSLYRYQGKSKTLMYDVTKMISTLKGKRGDHRIFRLAENLCMNLILSLR
DFFFVKREGKGPTEFTETLNRITIVTLAIIIKTRGIGEFEQLLYLQTMLEQILATSQHTW
SEKTLRYFPSILRDALSGRMDKRGLAIQAWQQAETTVINQCTQLLSPSADPSYVVTYINH
SFPQHRQYLCAGAWILMHGHPENINCTNLGRVLREFSPEEVTANIYTMVDVLLHHIHLEL
QRGHPLQDLMLKACGNLSVFIWNHELLPPDILLLALIDRDDDPHALRIVISLLDSKELQQ
RVKLYLLNRGSPEHWLSSGPFKRVELQKALGNYLSWKERYPTFFDDIAARLLPIIPLIIY
RLIENDAMDAADRVLQVYSPFLHYYPLNFTFVRDILSYFYGHLPGKLILRILNVLDIKKI
PFSESFPQHINSSNAAMCPPLDYFATLLLGLVNHVIPALNNSSKCAAMGDFANNSTRAPH
GKIPATSQSGPTNSFDGQKPYYQMQDPGTSTQLTLETAVIELLSLPVSPSQIVSSLVQIV
VHIQPTLVQSSNGLHGAPGSSGQGSILPTSPSGGSTDSLGATRTTPSVSGMNTSNFVSRS
GYTCQQLSCLLIQACGLLLAQLPPEFHVQLYVEAARIIKESWWLTDAKRSMSELESAVSY
ALLDPTWAAQDNTSTAIGNIVALLHAFFCNLPQEWLEGTHLIIKHLRPVTSVAVLRISFR
IMGPLLPRLVNAHTLFNKTVSLLLNILVDVFGKNSQLSAPIEATEISDLIDFLHHVIHYE
GASSKPRTEILALFGRAAENLRPDVQHLLSHLNTDVNTSVYAKIVHSA
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgagttcccgtttccactccaagcagtggagaaatggagcataacaacacacat
cagttgaggtctcggtctcaccaccagtttcatccctctcgacctgccatccttgatctc
ttcaatttatacttaggactgaaaaattctggacaaaaatcagatgattctatcagagaa
ccaccgaacaagacacagaagagagtaactgctcttaacagagagcttcctccacgaaat
gagcaatttctcttagattttggacagctgcagagccagtttactgacaaggaacagcta
agtgcagtgacagaatctgttcttatttctctcgttattcattgcagtagtcacgcacct
cgtgcagaatttattctatttgccatatgcagtttgtctagtataggattcataaactgg
gatactttcttgccttctcttctttcctccgtttcatcaactgagatatccgctagccag
gctaatctaccatctggtgctgtctcttctgctaatttaacatctggattgctcccttct
tccaccacagtagcgagtacctccatttttcactcatcaaatcctgcatctcctttgccc
actgtccatggtattgggtcccctcttcattcagcagctgaaccctcatcttctgctgct
ttgtctcccatgaagtcttctgatgttaatggtactagccaacagtctattgcaaaagtg
aatgtgttgtcaaaggataatgctacaagcagtctgcgtcagttatgttgcaaaattatt
ttaactggtctagattctaatcttaagccagtaacacatgccgaagttttccaccatatg
ttgaattggttgattaattgggaccaaaagttacatggtgttgatgagttagacagtatg
aaatattggaaaccagataaggccctaattaagtggctacatagttgtttagatgttatt
tggttgctggttgagaatgataaatgccgcataccgttttatgaacttctccggagtggg
ttgcagtttttagaaaatataccagatgatgaagctctgttcactcttattttggagatc
catcggaggcgagatatgatggctatgcatatgcaaatgttggatcagcaccttcactgc
cctacatttgggacccctcgacttcttcctcaagccactgcaaattcgtctggtgaagca
gttgctaacatgagatattcaccaattacatattctagtgtgcttggggaaccattgcat
ggagaggatcttgcagcttccattcaaaaaggaagcctggattgggagagagctttgcgt
tgtttaaagcatgcacttcggaacactccatcaccagactggtggagacgtgtgcttctc
gtggctccctgtcacagggttcatgcccaggctccaactccgggtgctgtgtttacatcg
gaaatggtttgcgaggcagttattgaaagaattgttgaattattgaagttgactaattca
gaaatcagttgctggcaggagtggcttattttctccgatatattcttttttctcatgaaa
agtggatgcgttgattttgtggagttcgtggacaaattagtattaagacttcaagagggt
gatcaacaaatactgaggacgaaccatgttacgtggttacttgcacaaattattcgggtt
gaactagtgatgaatgctctaaatacagactcaagaaaggtggagacgaccagaaaaatt
ctttcgttccataaagaggagaaaagctctgatcccaataatcctcaaagtatcctactt
gatttcattagcagttgtcagaacttgcgcatttggacactaaatacagcaacaagagaa
tacctgaataacgagcagctacaaaagggaaagcaaattgatgaatggtggagacaagtt
aacaaaggggaacgcatgatggattatatgaatttggatgatagatcaattgggatgttt
tgggttgtgtcctacacaatggctcagcctgcttgtgaaactgtgatgaactggttaacc
tccgcgggggttactgagcatttacctggaccaaatttgcagtccaatgagagattaatg
gtgatgcgtgaagttagccccctgccgatatcattgttatcgggattgtccataaattta
tgcttgaaagtggcttttcagatggaagaatcaatgttttctggacaggctgtgcccagc
attgctatggttgaaacatactgtaggttaatgctcatttctccccattcgttgttccgt
tcgcttctaactcatctgacatcgaggaatcccaccacattgaccaagccaggaaacaca
atcttggtgtttgaaattcttaactatcgtttcctttcactctacaggtaccaaggtaag
agcaagacattgatgtatgatgtcaccaaaatgatttctacactgaaggggaaacgcgga
gatcatcgcattttcagattggctgagaacttatgtatgaatctgattttgtcgttgaga
gactttttctttgtgaagagggaagggaagggtccaactgagtttactgagactttaaat
aggataacaattgttactcttgcaatcataattaaaactcgtggaattggagagtttgaa
cagttactgtaccttcaaacaatgctggaacaaatcttagcaactagccagcatacctgg
tctgagaaaactttgcgctattttccttcaattttacgtgatgccttgagtgggcgaatg
gataaaaggggcttggcaatccaagcatggcagcaggcagaaacaactgttatcaatcaa
tgcacacagcttctttcgccctcagctgatccctcatacgttgtaacttatattaaccat
agttttcctcagcaccgccagtatctttgtgctggtgcgtggatactaatgcatgggcat
ccagaaaatattaactgcacaaaccttggacgtgttttgagagagttttctcctgaagag
gtgactgcaaatatttatacaatggtagatgtcctgcttcatcatattcacttggaacta
cagcgtggacatcccttgcaggatcttatgctaaaagcctgtggaaacctttcagttttc
atctggaaccatgagcttctgcctccagatatcctactgctggcacttattgaccgtgat
gatgatccacatgctttgcgcattgtaattagcttacttgacagtaaggagctccaacaa
agagtgaaactttatctcctaaatcgtggctcgcctgagcattggctttcgtctggacct
ttcaagcgtgtggaattgcagaaagctcttggaaattatctgtcatggaaggagaggtat
ccaacattttttgatgatattgctgcacgcctgcttccaatcatcccccttatcatatat
agactcattgaaaatgacgctatggatgcggctgatagagttcttcaagtttattcaccc
ttccttcattactatcctctgaactttacgtttgttcgtgatatactttcttatttctat
ggtcatcttcctggaaagctaatacttcgtatactgaatgtcttagatattaaaaagata
ccattttcagagtcattcccgcaacatatcaactcatcaaatgcagccatgtgcccacca
ttggactactttgctactcttttgttaggactggtgaatcatgttattcctgctttaaat
aatagctccaaatgtgcagcgatgggagattttgcaaataattctacccgtgctccccat
ggaaagatcccagcaacatcacaatctgggccaactaattcttttgacgggcagaaacct
tattatcagatgcaagaccctgggacatccacccagcttactcttgaaacagctgtcata
gaattactttctcttcctgtttcgccatcacagattgtctcatctctagttcaaattgtt
gttcacatacaaccaacccttgtccaatccagcaatgggctgcatggagctcctggtagt
tctggacaaggctctattttgcctacttctccttcagggggaagtactgattctttgggt
gcaactaggacgactccatcagtttcaggaatgaatacttctaattttgtttcacgtagt
ggttatacttgccagcagctgtcttgcttgttaatccaagcatgcggtcttcttttggca
caacttcctccagaatttcatgtgcagctatatgttgaagctgcacgcataataaaagaa
agttggtggcttactgatgctaaaaggtctatgagtgaattagaatcggctgttagctat
gctctactagatcccacctgggctgcacaggataatacctcaacagccattggtaatatt
gtcgcactgctacatgctttcttctgtaacctcccacaagaatggctcgagggaactcat
cttatcattaagcaccttaggcctgtgacatctgttgcagtattaagaatatcatttcgt
attatgggtcccttgcttccgaggttggtcaatgctcacacccttttcaataagacagtg
tcgctgcttttgaatatcttggtggatgtgtttgggaagaactcacagctgtcagcacct
attgaagcaacggaaataagtgatcttatcgacttcctgcatcatgttattcattacgag
ggggcatctagtaaacccagaacagaaattttggctctttttggaagagcagcagaaaat
ttgcgtccagatgttcaacatcttctttcccatctcaacactgatgtaaacacttcggtt
tatgcaaaaatcgtccacagtgcttaa
DBGET
integrated database retrieval system
