Solanum stenotomum: 125866699
Help
Entry
125866699 CDS
T08385
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125866699
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125866699
Surveillance factors
Other surveillance factors
125866699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
125866699
NCBI-ProteinID:
XP_049402962
LinkDB
All DBs
Position
6:36286599..36295542
Genome browser
AA seq
1548 aa
AA seq
DB search
MAEGNLDLPDDLLSSKTSDHSKGNGDNKPFMGQLDISKDQAMVDSSIPLSPQWLYVKPSD
TKMEPRPPSSLSLGSSVDSSQKEAWRTDVPDDKKDWRRTTVETESSRRWREEERETGLLG
RRERRKTDRRAEHDVNNRNSGLDTRRDNKWSSRWGPDDKEKENRSEKRIDVDKEDVHNDG
QTFVANRTVSERESDSRDKWRPRYKMEGNSAAPSSYRAAPGFGQERGKVEGSNVGFNLGR
GRSTGTIIRPSSGGAIGASPFENSVAGKSRISTGIFSYPRGKTLDIYRRQKLGSSLCSMP
ENMEEAPPVTQVIAIEPLAFVVPDAEEEAVLNDIWKGKITGGGVSHNSFRKGQSMDNVTE
TGDTEPNNTKMGAPFADVTEETVDRLLKTSIGVEEANTYSFVYENGVKVKCDGGDNHEGL
KDNVSEAIAADGSLFTRKRTDNSDCLNYISGSQSDISVQSLPDSGVTRTPIFENNQHVAF
DGSLKVSDDSNSVFVKSSSEIYWNNLLGRGIPPEELSLYYRDPQGEIQGPFLGADIISWF
DQGFFGMDLLVRLEDAPEDSPFFELCDVMPHLKFEHEHVGNTNLSQAEPSAVLEGKLDSG
LRSSASVSEMVGSAAFDGSSWPPSDFDGLGGHRIQSIPDHPARQFKPPYSHSEDFNNFAA
QDEEIVFPGRPGSGGNAIGKTSTGLTDPSNIHRATPSAMCEGGVPNHEQTLHPLGLLWSE
LEGTAGKSGPISDVPFRGSGQDQVLNSGAARVGPFGARTDSTSALETWTDAYRRNAGSEP
NIYQDAMDASRLLHQDHELNRFELADKLFSQQLQQQHPHNLISSHNSHLNEAMMERGTNH
NSIHQPQLASQTGQDLEHFMALQLQQQRQLQLQQQFHQQQMLMKEQESHARQLVLEQLLQ
RQVREPSYTQSRLDAIRHSSALEQVLIEQQILSELQQRPHLPPRHAEPSIEHLIQAKFGQ
IPHQGPQSDLMELLSRAKHGQLHPLEHQALQQEQAHERLRQRLEMEEDRQIGAVWPADET
GQYLRNPGVARRANSGFGPLDIYQQQQIPPPEEHVSHLERNLSMQDRLQRGLYDTGFLPL
ERTMSVPGGGPGVNLDAINPLVRAQGIEMQDPNSRMHSAGHMPGFSTGIHLQSPHRPLFS
NQFHAPNGDTVENHWSERNGLLPADWMETRMQQLHLNGERQRRDFNVKRASEDQSMWMSA
GANDDSSKRLLMELLQQKSGQQSTDQAEMTRGILFERGFHSGHFSTTNASNRSFNALLDQ
DMSLNQAITVGSYGSNSGFPPQRDHVNEIADSLDACERFPFKSHSGALAEAQPVFSSINE
ASQVHLEARESIVRQAGVPTVEGEMPINLLSRHTSLGTGVCNVFKSSSGGSLDFYNDKSD
RRDSATEEIPKERMAVTSKRSDNILPKHPPVLRVSSTQEGLSEITSDSLVRGKNPSDAMA
SEGGKREAGGNAANQVPSAMTSEKKDGRFRRTASCSDADVSETSFSDMLKSNAKKPTAQE
AHASEALDATHRSGKRKGKKGRQIDPALLGFKVTSNRIMMGEIQRIED
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaggaaatcttgatcttcctgacgatcttctttcctctaagacttccgatcac
tccaaaggtaatggtgacaacaagcctttcatgggtcagcttgatatttccaaagatcaa
gcaatggtggacagcagcattcctttgtctccacagtggctttatgttaaaccaagtgac
acaaagatggaaccgcgtccaccaagctctctgtcacttggaagttctgttgattcaagt
cagaaggaggcttggcgtacagatgtacctgacgacaagaaggattggagaagaacgaca
gtggagactgagagcagtcgccggtggcgtgaggaagaaagggaaactggcttgcttggt
cggagagaacgaaggaaaaccgatcgccgtgctgagcatgatgttaataaccgcaattct
gggcttgatacaaggcgtgataacaagtggtcttctaggtggggtcctgatgacaaagaa
aaagaaaatcgcagtgagaaaaggatagatgtagataaggaagatgttcataatgatggt
caaacatttgtggctaaccgtactgtctcagaacgggagtcagattctcgtgacaagtgg
cgtccacgctataaaatggagggcaactctgctgctccaagttcctatcgagctgctcca
ggttttggacaggagagaggaaaagtagaagggtcaaatgtgggatttaacttgggtcgt
gggaggtctactgggactattataagaccttcctctgggggtgcaattggtgcttcacca
tttgagaattctgtcgctggaaaatcaagaatctcgactggcatattcagttatccacgg
gggaaaactcttgacatataccgcaggcaaaagcttggctcatctctttgtagcatgcct
gaaaatatggaagaagctcccccagttacccaagtaattgctattgaaccattagctttt
gttgttcctgatgctgaggaagaggctgttctcaatgatatatggaagggtaaaattacc
ggtggtggtgtttctcacaattcttttagaaagggtcaatcaatggataatgtcacagaa
acaggggatacagaacccaacaatacaaaaatgggtgctcccttcgctgatgtcactgaa
gagacagttgataggttattgaaaacttcaataggtgttgaagaagccaatacctatagc
tttgtttacgagaacggtgtcaaggtcaagtgtgatggaggagataatcatgaaggactg
aaagacaatgtttctgaagctattgctgcagatggaagtttgtttaccaggaagagaact
gacaatagtgactgccttaactacattagtgggtcccaatctgatatttctgtgcagagc
ttaccagattccggagtaaccaggacacctatctttgagaacaatcaacatgttgctttt
gatggcagtttgaaggtgtctgatgattcaaattctgtatttgtgaagtcctcttctgaa
atttattggaacaaccttctaggaaggggtattccaccagaggagttgagtttgtactat
cgtgatcctcagggcgaaatccaggggccatttctcggagctgacatcatttcatggttt
gatcagggattttttggtatggacttactagttcgcttggaagatgcccctgaagattca
cctttctttgaactttgtgatgtaatgccgcatttgaaatttgaacatgagcatgttggt
aacaccaatctttcccaggcagaaccatctgctgtactagaggggaagttggattctggt
ttacgtagctcagcttctgtttctgagatggttggttctgctgcctttgatggctcgagc
tggccgccatctgattttgatggccttggtggacatcgtattcagtcaatacctgatcat
ccagctcgtcaatttaaacctccatattcacatagtgaagactttaacaattttgctgct
caagatgaagaaattgtgtttccaggaagacctggaagcggtggcaatgctattggaaaa
acttccacaggccttactgatccttcaaatatccaccgtgcaactccaagcgcaatgtgt
gagggtggagttccaaatcatgaacagacattgcacccacttggcttattatggtcagag
cttgaaggcactgcaggaaagagtggtcctatctcagatgttccttttagaggaagtggc
caggatcaagttctaaactctggtgctgcaagggttgggccatttggtgccaggacggac
tcaacctctgctctggagacatggactgatgcttatagaagaaatgctggatctgaaccc
aacatatatcaagatgctatggatgccagccgcttgttgcaccaggaccatgaactgaac
cggtttgagttggcagacaagctgttttcccaacaacttcagcaacagcatcctcataat
ttgatatcctctcataatagtcacttaaatgaagctatgatggaacgtggcacaaatcat
aattcaatacaccaaccacagttggcgagtcagactgggcaggatctggaacactttatg
gcgcttcagctgcaacagcagagacagttgcagcttcaacaacagttccatcaacagcaa
atgctaatgaaagaacaagagtcccatgctaggcagctggttcttgaacaattattgcag
agacaagtacgtgaaccaagttacacacaatcacgtcttgatgctattaggcatagcagt
gctctggagcaggtgttgatagagcaacaaattctgagtgaactgcaacagcgtccacat
cttccaccaagacatgctgaaccatctattgagcatctcattcaagcaaagtttggtcaa
ataccacatcaagggcctcaaagtgatttaatggagctcctatcacgggcaaaacatgga
cagttgcaccctttggagcatcaagcccttcaacaagaacaagcacatgagaggttaaga
caacgtttggaaatggaggaagacagacagattggcgctgtctggcctgctgatgaaact
ggtcagtatctaagaaatccaggtgttgctcgtcgagcaaactctggatttggtccatta
gatatttaccaacagcaacagataccccctccggaagagcatgttagtcatctggaaagg
aatttgtcaatgcaggatagacttcagcggggtctctatgacactggatttctgcctttg
gaacggacgatgtcagtacctggtggtggtcctggtgttaatttggatgccataaatcct
ctagtgcgcgcacaaggtatagaaatgcaagatccaaattcaagaatgcactcagctggt
cacatgcctggtttctcgactggcatccacttgcaatctcctcaccgtcctctattttca
aatcagtttcatgctccaaatggagatacagtggaaaatcattggtctgaaagaaatggt
ctgttaccagctgattggatggaaactaggatgcagcaactacatctcaatggtgagaga
caaagaagggattttaatgtcaaaagagcttctgaagatcaaagtatgtggatgtcagct
ggtgctaatgatgacagttcaaagcgattacttatggaactgctccagcaaaaatctggt
cagcagtcaactgatcaagcagaaatgaccagagggattttgtttgagaggggctttcac
tccggtcacttttctacgacaaatgcttcaaaccgttcattcaacgctcttttggaccag
gatatgagtctaaaccaagctatcactgttgggtcatatggttctaattcaggttttcca
ccacagagagatcatgtaaatgagattgccgatagtcttgatgcttgtgagagatttccc
ttcaaatctcattctggagctttagctgaagctcaacctgtcttttccagcatcaatgaa
gcctctcaggtacatttagaggctcgcgaaagtatcgttaggcaagctggtgtgccgact
gtagaaggggaaatgccaattaacttgctcagcaggcacacttcacttggtactggagtt
tgtaatgtttttaaatcatcttcaggtggaagtcttgacttttacaatgacaagagtgat
agaagggattcggctacagaggaaattcctaaggaacggatggctgtgacatcaaaaagg
tcagataacatcttgccgaagcacccacctgtattgcgcgtttcttcaacccaggagggt
ctatcggagataacttctgatagcctagtgagaggcaaaaatccttcagatgccatggct
tctgaagggggtaagagggaagcgggaggtaatgcagcaaatcaagttcccagtgctatg
acgtctgaaaagaaagacgggcgcttccgacgaactgcatcttgtagtgatgctgatgtt
tcagagacatcattcagtgacatgcttaagagtaatgctaagaagccaacagctcaggaa
gcacatgcatcagaggcattggatgcaacacaccgtagtggtaagaggaaaggaaagaaa
ggaagacaaattgatcctgctcttcttggtttcaaggttacaagcaatcgcatcatgatg
ggtgagatacaacggatagaagattag
DBGET
integrated database retrieval system
