Solanum stenotomum: 125866832
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Entry
125866832 CDS
T08385
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
sstn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125866832
03460 Fanconi anemia pathway
125866832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sstn03032
]
125866832
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125866832
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
125866832
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Topoisomerases
125866832
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
125866832
FA (Fanconi anemia) pathway
125866832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
zf-CCHC_2
Zn_ribbon_GRF_2
Toprim_4
Motif
Other DBs
NCBI-GeneID:
125866832
NCBI-ProteinID:
XP_049403152
LinkDB
All DBs
Position
6:39863320..39916827
Genome browser
AA seq
917 aa
AA seq
DB search
MAGGGGRVIRVLNVAEKPSVAKAVSGILSKNQPGGMRVRDGRSRYNKIFEFNYTIRNQPC
QMLFTSVTGHLMELEFDERYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQW
IVLWLDCDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSD
AVDVRQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWE
IQAHEPEEFWTINCTHNSDEGTATFNWMRGHLFDYTCGVTIYEMCIQEPIATVTKVKQQE
KLKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDSFSEKTDLRT
MVQEQEGHLVWGIYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHR
VYELVVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIP
TYSFGQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAI
KDSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSIGTKRKAEVLETCLQQ
MKACFSDARTNKGKLLEAMAIFFERSNRSSGGEQQAVGDVVRRCGLCLESDMVLRQKPDG
NFMVGCLGYPQCRNVVWLPGSVSEASVTENTCTSCSPGPVFKIQFKFRRLEIPPNYSVQH
LGCIGGCDDILRQLVEICGTGSRNNSNTSGRGRGNPTASSSAQRGNSRAQSSCAYCRQTG
HLSNDCPSQASRGRTTRAQEVDNGESSIPCNSCGAPCILRTANTANNRGRKFFSCQSQEC
NFFVWEDNLNGGRAERANTSASTSSGRGGRGRGHGRGQSGAHSSNVSFVSATGEPITGRC
FICGDPGHFANVCPRRG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggccggaggcggaggacgggtgataagggtactaaatgtggctgaaaagccgtcggtg
gccaaggcagtgtcggggatactatcgaagaaccaaccaggtggcatgagagtaagagac
ggacgttccaggtacaacaaaatctttgagttcaactacaccattcggaaccagccttgc
cagatgctgttcacatccgtcacgggccatctcatggagcttgagtttgacgagcgttac
cggaaatggcactcgtgtgacccgctcgacctctataatgcgcctgttcggaagtttgtc
cctgaggataagttggatatcaaaaggacactggaggcagaagccagaagttgtcagtgg
attgtattatggctcgattgtgatcgagaaggagaaaatattgcatttgaagtgttggat
gtatgtagacaagcgaatcataaccttaatgtgtggagagctcggttctctgccttaatt
gacagggaaattcaccaatcagtgcagacccttgttcagccaaatcagttattttctgat
gctgtagatgttcggcaagagatagatcttcgtattggagcttctttcacaagatttcag
acaatgcttctgaggggtgcatttgtccttgattttgctacagatgatagaaatattgtc
ttaagctacggtccctgccagttccctacacttggctttgttgtggagcggtattgggag
atacaagcacatgaacctgaagaattttggacaatcaactgtactcacaactcggatgaa
ggcactgctacctttaactggatgcgtggtcatctgtttgattacacatgtggagtaacg
atttatgagatgtgcatccaggaacccattgcaacagttaccaaggttaaacagcaagag
aaactcaaatacccccctcatcctttaagtacaattgagcttgaaaagcgtgcatccaga
tacttccgtatgagttccgagcagacaatgaaggtggcagaagatttatatcaaaatggg
tttatcagctatcctcgcacagaaactgatagcttctcggagaagaccgacttgcgtaca
atggtgcaagaacaagaaggtcatcttgtatggggcatatatgcgcagcgcctactagac
cctcaatcaggactgtggagaaaccctagtggaggtgggcatgatgacaaagcccatcct
cctattcatccaactaaattttctgctggcgaaaccagatggagccaggatcaccataga
gtgtatgagttggttgttcgccattttttggcctgtgtttctcaacctgctgttggggct
gaaacaatagttgagattgatattgctggtgaatccttttctgcatgtgggagagtgata
cttgcaaaaaactaccttgatgtgtaccgatttgaatcatggggaggttcagtgatcccc
acatacagtttcggccaacagtttacaccaacaactttgacccttgattcaggagttaca
agacctcctccccttttaagtgaggccgatctattgggttgtatggacaaggctggcatt
ggaacagacgcaacaatgcacgatcatataaagaaactacttgatcgattttatgcaatt
aaggactcgaacactcgattctcaccaactaaactaggggaagcactagtaatgggatat
gatgatatgggttatgaactatggaaaccatatctccgggctatgatggaatgtgatatg
aaagctgttagcataggaaccaagagaaaggctgaggttctagaaacttgcttgcagcag
atgaaagcttgcttttcagatgccagaacaaacaaaggaaagctccttgaagccatggct
atcttctttgaaagatcaaacagatccagtggtggcgagcaacaagcagttggagatgtt
gttcggagatgtggactttgtctagagtcagatatggtgctcagacaaaagccggatggg
aacttcatggttggttgtttgggttacccacaatgcagaaatgttgtctggctacctgga
tctgtctcagaagcttctgttactgagaatacgtgcactagctgcagtccaggacctgtt
ttcaagattcagtttaaatttcgacgactggaaataccgccaaattacagtgttcaacat
ttaggttgcattggtggctgtgatgatattcttaggcagcttgtagaaatttgcggaact
ggttctcgcaataattccaacacttcaggcagaggacgtgggaaccctacagcatccagc
agtgcacaaagaggcaattccagagcacaaagttcttgtgcatactgcaggcaaacaggg
catttgtcaaatgattgtccttcacaggcttctcgtggtcgcactactcgggctcaggaa
gttgacaatggagaatcttcaatcccttgtaattcatgtggagcaccttgcattttgcgc
actgccaatactgccaacaacaggggaagaaagttcttttcatgtcaatcacaggagtgc
aacttttttgtatgggaagataatctcaatggaggaagagcagagcgtgcaaatacttct
gcatccactagcagcggaagaggtggccgtggtcgtggccatggccgtggccagagtggt
gcacattccagtaatgtgtcatttgtgtcggcaacaggtgaaccaataactggcagatgt
tttatttgcggtgatccaggtcattttgctaacgtttgcccacgtcgtggttga
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