Solanum stenotomum: 125867098
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Entry
125867098 CDS
T08385
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125867098
09122 Translation
03013 Nucleocytoplasmic transport
125867098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125867098
03041 Spliceosome [BR:
sstn03041
]
125867098
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125867098
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125867098
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125867098
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
WHD_Sfc3_5th
Motif
Other DBs
NCBI-GeneID:
125867098
NCBI-ProteinID:
XP_049403477
LinkDB
All DBs
Position
6:34320483..34377988
Genome browser
AA seq
1859 aa
AA seq
DB search
MSLSPLEYLYFTEDSIKELKNGNTSFKFAQPLPTLRFLYELCWVMVRGELPFQKCKMALE
CVEFVDYASQEELGSSLADIVTQLAQDLSLPGENRQRVSKLAKWLVESALVPLRFFQERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQIPEGS
SQNSSAATVGIIKSLIGHFDLDPNRVFDIVLECFERQPGNSIFLDLIPIFPKFHASQILG
FKFQYYQRLEVNDPVPSELYQLTALLVKRDFIDVDSIYAHLLPKEEDAFDHYNAFSAKRL
DEANKIGRINLAATGKDLMDEEKQGDVTVDLYAALDMETEAVAERSSELENSQPLGLLMG
FLEVDDWYHAHVLFGRLSHLNPAEHVQICDGLFRLIEKSISGPNDLVCKMQLLGSLSGVV
TDNSMEVANSSSSRSYINLRKELFEMLSSVGPHLYRDMLLLQKVCRVLRGYYICAHELVT
SGETCFISQTVTIGDRTPQMHLKDATSRIVEALGGCLLPSLQLIPANPAVGLEIWELMSL
LPYELRYRLYGEWEKDDEQFPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGREKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVFMQELIQQMANVQYTEN
MTEEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDALLPKDEPKLAIPLLLLIAQ
HRSLVVINAEVPYIKMVSEQFDRCHGALLQYVEFLSSAVTPTAAYAVLIPALEELVHVYH
LDPEVAFLIYRPVMRLFRCQRNSDVFWPSDSDEAVNAANAEKESERSDSSAYLLLDLGSS
QKPISWTDLLDTIKTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEIGKQHAALK
ALEELSDNSSSAITKRKKDKERIQESLDRLTTELQRHEEHVTSVRRRLTREKDTWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAVFVNTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEVGRLGRFLYETLKTAYYWKGDESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALILLTKISSVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALASRKPSWVTDEEFGMGYLELKLAAAPVSKSSAGNSVAIPNGSG
ASVSQGEPSIGRTVVAGRVVDGKLDRPDSSMPKPDLGQAKQKGSQSINGLDVQSMPSATL
QSDTPSQNSTCRPLEESTIKAASKMSGEQEGRATGKRATLAGSLSKQQKHDISKDDKSGK
AVGRASGAASGDVSYPSESRASGSVNVSTTVSGNGSMFSAAPKGAASLTRLLDPSNESNA
ELTTTKSADLRVSAGKDDVSESSDVHKESTLRLVHSPRQDASKANEKVQKRSIPAEELDR
LNKRRKGEIDGRDIECGDARSSEKERLIDARAADKLHPADYDRHGSDDQILNRASEKPLD
RSKDKGGERLERDPRERGDRPDRSRGDDAFEKSRDRSTERHGRERSIERVHERVADRNFD
RLSKDERIKDDRSKLRHSEASVEKSLTDDRLYNQNLPPPPPLPPHLVPQSINAGRRDDDS
DRRFGTARHSQRLSPRHDERERRRSEENNTLLQDDLKRRREDDFRDRKREERELSIKVEE
REREREKAILVKEDMDPNASKRRKLKREHMASEPGEYSPAAHPPPLSINMTQPSDGRDRG
ERKGVIVQQRPGYLDEPGLRIHGKESASKAPRRDADSMYDREWDDDKRQRAEPKRRHRK
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgtctctttcacctttggagtatttgtactttacagaggactccatcaaagagttgaaa
aatggaaacactagcttcaaattcgctcaaccacttcccactcttcgctttctttatgag
ctctgctgggttatggttcgaggtgagttgccttttcagaaatgtaaaatggcattagag
tgtgtggagtttgtggattatgcatcccaagaggagctaggatcgagtttggctgatatt
gttacccaactggctcaggatctgtcattgccgggagaaaatcgtcaacgtgttagcaag
ctggcaaaatggcttgtggaatctgctttggttcctttgagattttttcaggagcgatgt
gaggaagagtttttgtgggagtctgagatgatcaagataaaggctgcagatttgaagtcg
aaagaggtcagggtaaacactcgtcttctttatcagcaaacaaagtttaaccttcttcgt
gaagaaagtgaaggttatgcaaagctggtcactctcctttgtcaaattccagagggttct
agccaaaattcttcagctgctacagttggcataatcaagtcgttgattgggcattttgat
ctggatccaaaccgagtctttgatattgttttggaatgttttgaacgtcagcctggtaat
agtatatttttggacttgattcccatatttcccaagttccatgcctcccagattctgggg
tttaagtttcaatactaccaacgcctggaagtaaatgatcctgttccaagtgaactttat
cagctgacggccttgctggtgaaaagagacttcattgatgttgacagcatttatgcacat
ttacttcccaaggaggaggatgcttttgaccattacaatgcattttcagctaagagactt
gatgaggccaacaaaatagggagaataaatcttgctgctactgggaaggatctcatggat
gaagagaaacaaggagatgtgacagtggatctgtatgctgcattggacatggaaacagag
gcagttgctgagcgttcctcggagctagaaaatagtcaacccctgggcttgcttatggga
tttcttgaagtggatgactggtatcatgctcatgtgttgtttggccgtctctcacatctc
aatccagcagagcatgtacaaatatgtgatggattattcaggctcattgaaaaatcgata
tcaggaccaaatgaccttgtttgcaagatgcaacttttgggttcactttctggagttgtc
actgacaactctatggaagtggcaaattcatcaagcagtagatcttatatcaatcttcgg
aaagagctttttgagatgctttcttctgtgggacctcatctttatcgagatatgttattg
ctacagaaggtatgcagagtattgagaggttactacatttgtgcacatgagcttgtcact
agtggagagacatgctttatctcccaaactgttaccattggagatcgaactcctcaaatg
cacttgaaggatgctacgtcaagaatcgtagaagcattaggaggatgtctgcttccttcc
ttacaattaataccagcaaatcctgcagttggactagagatctgggaactaatgagtctc
cttccatatgagctgcgttatcgtttgtatggtgaatgggagaaggatgatgagcaattt
ccaatgcttttggctgcaaggcaaacagcaaagttggacacgaggaggatcctgaagcgc
cttgcaaaagaaaatctaaagcagcttggtcgaatggttgccaaacttgctcatgccaat
ccaatgacagtattgcgaacaattgtccaccagattgaggcttacagggatatgattaca
cctgttgtagacgcttttaagtatctgactcagctggagtatgatattttggaatatgtt
gttattgagcggttggcacaaagtgggagagagaagctgaaagatgacggccttaatttg
tctgattggcttcagtctttggcatcattttggggtcacttgtgtaaaaaatatccgtca
atggaattgaggggcctttttcagtatcttgtcaatcagttgaagaaaggaaatggtatt
gagcttgttttcatgcaggagctcattcagcaaatggctaatgtacagtatacagagaat
atgacagaggaacaattggatgccatggctggaagtgacactctacgctaccaggctacc
tcatttggtataacacggaacaataaggcattgattaaatcaactaacaggctgagagat
gctttgctcccaaaagatgaaccaaagttggcaattccacttttgctactcattgctcaa
catcgttccctggtagttataaatgcggaagttccatatattaaaatggtcagtgaacag
tttgataggtgtcatggagcccttcttcagtatgtggaatttttgtctagtgcagtgact
ccaacagctgcctatgctgttcttattccagctctggaagagcttgtacatgtgtatcat
cttgatcctgaggtagcatttttgatttatcggcctgttatgaggctcttcaggtgtcag
agaaattcagatgtcttttggccttcagatagtgatgaagcagtgaatgcagccaatgct
gaaaaggagtctgaaagatcagactcatctgcttacttactccttgatcttggttcatct
cagaaacctatctcatggacagatcttcttgataccatcaaaacaatgttgccttcaaaa
gcctggaatagcttgtccccagacttgtatgccaccttttggggtcttacactatatgat
cttcatgttcctcgatcccgttacgagtctgaaattggtaagcagcatgctgctctaaaa
gctctggaagaactttctgataattcaagttctgcaatcacaaaaaggaaaaaagataaa
gaaagaattcaagagtctctagatcgattgacgacggagcttcagaggcatgaagagcat
gtaacatctgttcgaagacgcctgactcgtgaaaaggatacatggctgagttcctgtcct
gatactttaaagatcaacatggaattccttcagcggtgtatatttccacgctgtacattc
agtatgccggacgctgtgtattgtgccgtgtttgttaatactcttcattcccttggaaca
cctttctttaacactgtgaaccacatagacgttttgatatgtaagacactacaacccatg
atctgttgttgcaccgaatatgaagtaggtcgactaggaagatttttgtatgagacattg
aagacggcttattattggaagggtgatgaatcaatttatgaacgtgagtgtggaaacatg
cctggatttgccgtctattacagatatccaaacagtcagcgtgttacgtatgggcagttt
attaaggtacactggaagtggagtcaaagaatcacgaggttgctcatacagtgtctggaa
tcaactgagtacatggaaatcagaaatgctcttattttattgacaaagatctccagtgtc
tttccagttactcggaagagtggaataaaccttgagaagagggttgccaaaattaaatct
gatgaaagagaggatctcaaagtattggctacaggggttgctgcagctttggcatctaga
aagccatcatgggtgacagatgaagagtttggaatgggttacctagaactaaagcttgca
gcagcacctgtttctaagtcttcggctggtaattcagtggccataccaaatgggagtggg
gctagtgtttctcaaggtgagccttctattggaagaaccgtggtggcaggaagagtagtt
gatggcaagttggataggccggacagttctatgccaaaacctgatttaggtcaggcaaaa
cagaagggaagtcaatcaattaatggactagatgtgcaatctatgccatctgctaccctg
cagtctgatactccaagtcaaaactctacgtgtagaccattggaagagagtaccataaaa
gctgcttctaagatgtctggcgagcaggagggaagagccacaggcaagcgagctactctg
gctggatctctctcaaagcaacaaaagcatgatatttcaaaagatgataagtctgggaaa
gctgttggaagagcatctggagctgcttctggtgatgttagttatccttctgagagcaga
gcaagtgggagtgttaatgtttctactacagtttcagggaatggtagcatgttttctgct
gcacctaaaggtgcagcttcattgacgagattgttagatccttcaaatgaatctaatgct
gaacttacaactactaaatctgctgatctgagggtttctgctgggaaagatgatgtcagt
gaaagttctgatgtgcataaggagtccacattgcgtctggttcattcgcctcgacaggat
gcttctaaagctaatgaaaaagtacagaagagatctattcccgcagaagagcttgataga
ctgaacaaacgccggaaaggtgaaattgacggtagagatattgaatgtggtgatgctcgt
tcatcggagaaagaacggttaatagatgcacgagctgcagataaacttcatccagcagat
tatgatagacatggatctgatgatcaaatattgaaccgagcctctgaaaagcctcttgat
agatcaaaagataagggtggtgaaagacttgagagagaccccagagagcgaggggaccgt
cctgataggtctcgcggtgatgatgcatttgaaaaatcaagagataggtcaacggagcgg
catggaagagaacgttccattgagagagtacatgagagagttgctgataggaactttgat
aggttgagtaaggatgaaaggatcaaagatgacaggagcaagctgcgacatagtgaagcg
tctgtagagaaatctcttacagatgatcggctgtataatcaaaatttgcctccacctcca
ccactgcctcctcacctggtcccgcaatccattaatgcaggcaggagagatgacgattct
gatagacgttttggaactgccaggcatagtcaaagactttctccaaggcatgatgagaga
gagagacggcggtcagaagagaataacacattgttgcaggatgatttgaagagaaggaga
gaagatgattttcgagatagaaagcgggaagagagagaactttcaattaaggtagaggag
agggaaagagagagggagaaagctatcctcgtgaaagaggatatggatccaaatgcctca
aagaggcgtaaacttaagagagagcatatggcttcagaacctggagagtattcacccgct
gctcatcctcctcctctttctattaatatgacgcagcccagtgatggaagagatagggga
gagcggaagggtgttattgttcagcagcgtccaggttacttggacgagccaggtcttagg
attcatggaaaagaaagtgccagcaaagcaccccgtcgtgatgcggactctatgtatgac
agagagtgggatgacgacaagaggcaaagagctgagcccaagaggcggcatcggaagtaa
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