Solanum stenotomum: 125867244
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Entry
125867244 CDS
T08385
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125867244
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125867244
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Proton_antipo_C
Motif
Other DBs
NCBI-GeneID:
125867244
NCBI-ProteinID:
XP_049403626
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All DBs
Position
6:complement(58652933..58656214)
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AA seq
503 aa
AA seq
DB search
MFSNTFILSLSFFLILSFSSLIIATFNNLTLPHQHPFPESIVQQVNRRINESISRRQIFD
TTVINYQCLTGNPIDDCWRCDPNWVNNRQQLADCAIGFGHGAVGGKGGRYYLVSDPSDFD
TVNPTPGTLRHAVIQEEPLWITFAGDMIIKLKHELMINNYKTIDGRGANVHVTGGGCITL
QYVTNVIIHNIHIYNCVPSGNSNIRQSTTQVGWRGMSDGDGISIYSSRNIWIDHCALSHC
TDGLIDAIMGSTAITISNSYFTHHDKVMLLGHDDRYVADVGMQVTIAFNHFGEGLVQRMP
RCRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRFTAPTDPNAKEVTKRVDVDERDWT
EWNWRTEGDEMVNGAYFVPSGDGISNQYALASSMEPKSAFLIDQLTMNAGVIGVPRDTTV
AMSFGGRTRTTITANRSSSVRPSRSNDGDGGFLEKVFGSVASAGSSTSSPSSSTTNILFS
LLILYIITNNVGLLTLPLSLILQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgttttctaatactttcattctctctctttcattcttcttaatcttgtcattttcttca
ctaattatagctactttcaataatcttacacttcctcatcaacatccttttcctgaatct
attgttcaacaagtaaacaggaggatcaatgaatccatatcaagaaggcaaatatttgat
acaacagtaataaattaccaatgtctaacgggcaatccgatcgacgactgctggaggtgc
gacccgaattgggtcaacaaccgccagcagctcgcagattgcgccattgggtttggtcac
ggtgcagtcggagggaaaggtggccggtactacttggttagcgatccctccgactttgac
accgtgaatcctacccctggaaccctccggcacgcggtgatccaggaggagcccctctgg
atcacctttgccggagacatgatcataaagctcaaacacgagcttatgatcaacaattac
aagaccatagacggacgtggcgcgaacgtccacgtcacgggtggtggatgtataacgtta
caatatgttacaaatgtgattatacataatatacatatatacaattgtgtaccatcaggt
aatagtaacataagacaaagtacaacacaagttggatggagaggaatgtctgatggtgat
ggaatatcaatttatagttcaagaaatatttggattgatcattgtgctttgtctcattgt
actgatggcttaattgatgctatcatgggatcaactgctattactatatctaatagttat
ttcactcaccatgacaaagttatgcttttgggacacgacgatcgatacgtagccgatgtt
ggtatgcaggtgacaatagcatttaatcattttggagaaggattagtacaaagaatgcca
aggtgtagaagaggatatatacatgtagtaaacaatgattttacagaatggcaaatgtat
gcaattggtggaagtgctaatcccacaattaatagccaaggcaatcgttttactgcacca
acagatccaaatgccaaagaggtgacgaagcgtgtggacgtggacgagagggattggaca
gagtggaactggaggacagaaggggatgaaatggtaaatggagcatattttgttccttca
ggtgatggaattagcaaccaatatgccttggcatcaagcatggagcctaaatctgcattt
ctcattgatcaactcaccatgaatgctggtgttattggtgtccccagggataccactgtg
gccatgtcatttggtgggagaaccagaacaaccattaccgccaaccggagcagcagtgtt
agaccttcaaggtctaacgatggtgatggcggtttcttagaaaaggtatttgggagcgtt
gcatcggcaggatcatcaacatcatcaccttcaagttcaaccaccaacatcttgttttct
cttctaattttgtatataatcaccaacaatgttgggctattaacattaccattatcactc
atactacagtaa
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