Solanum stenotomum: 125867358
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Entry
125867358 CDS
T08385
Name
(RefSeq) protein CHROMATIN REMODELING 35
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125867358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125867358
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125867358
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
NUP120_helical
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
125867358
NCBI-ProteinID:
XP_049403787
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Position
1:complement(2024150..2032118)
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AA seq
925 aa
AA seq
DB search
MDLATEGWRNNFANSMAKRSQPYSPRDLFSTGIKKMKFDESKNQSSPTAAATSWREECEH
GKEKGSSRVANRSETFAVPDLLKVLDSGKFGSVTRDIEDLIVRRMKLVNSCYASDHSLPN
KVLEWERNCEWAFKGNQPSPAVIDLEDGQETNNIASGPIISACLPSAELLVIIDSDDEDT
QKETISLSQGIHSQINPISPFQGMPLKNAAIDFQIKDFMGRDYGERQISVEAVSLAGEAE
LMKDKGVYVGVEDDDEIDDGAEQPDEGLTDIWNEMSFALEFSKDVAAEPSPDEHTVEEED
ECDHSFILKDDIGYVCRICGVIKRSIETIIEFQYSKAARSTRTYHYEGRSVKDIGPTELL
PDGIIPSDGIDMTEICVHPRHRKQMKSHQVEGFNFLVSNLLRDKGGCIMAHAPGSGKTFM
IISFLQSFMANNDRARPLVVLPRGILGTWKKEFLRWQVDEIPLYDFYSVKADNRSQQLEV
LKQWSQERSVLFLGYKQFSTIVCDNVGSATAAACQEILLKCPSILILDEGHTPRNQDTDV
LTSLEKVQTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKLETSRSIKRTILSKVASSNR
RNLLKKSNDNDFYELVEHTLLKDDNFSRKSAVILGLRKMTEKVLHYYKGDFLEELPGLVD
YTVLLKLHPKQKSEVTELKKLGRKFKISSEGSALYVHPQLKSLSRNCSVKDRVDEEKIDT
LLENLELREGVKAKFYLNLLQLCETKGEKMLVFSQYLLPLKFLERLTVKTKGYSLGKELF
MITGDTDGDVRESSMERFNTSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQ
AIGRAFRPGQERKVYTYRLVASESPEEEDHATCFKKESIAKLWFEWSENYAQPDFEMETV
DINNCEDLFLESSRLNEDLVALYKR
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaactgaaggatggcggaacaattttgctaactcaatggcgaaaaggtct
cagccgtacagccccagagatttgttttccacggggataaaaaagatgaaatttgatgaa
agtaaaaaccagagtagccctactgctgctgccactagttggcgggaagaatgcgaacat
ggaaaagaaaaggggtcttcaagagttgccaaccgctccgaaacttttgcagttcctgac
ttgctcaaagtgttagattccggcaaatttggaagtgtcaccagagatattgaggacctt
attgtgcggcgaatgaagttagtgaactcttgttatgcaagtgaccattcacttcccaac
aaagtcttggaatgggaaaggaactgtgaatgggctttcaagggaaatcagccttccccc
gctgtgattgacttggaggatggacaggaaactaacaacattgcttcggggccaataata
tctgcatgtttaccttcagctgagcttctggttattattgattcagatgatgaagacact
cagaaggaaactatttctctatcccagggaatacactctcagataaaccccatttctcca
ttccaggggatgcccttgaagaatgctgctattgatttccaaattaaggattttatgggc
agggattatggtgaaagacagatttcggtagaagctgtaagccttgctggcgaagctgaa
ttaatgaaagataaaggtgtttatgtcggtgtagaagatgatgacgagattgatgacggt
gccgaacagcctgatgaaggtttgacagacatatggaatgagatgtcatttgctcttgaa
ttctcaaaggatgttgctgctgaaccttcaccagatgagcatacagttgaagaggaggac
gagtgtgatcattccttcatcttgaaagatgatattggttacgtgtgtcgtatatgtgga
gtcattaagagaagtattgaaaccatcatagaatttcagtattcgaaggctgccaggagt
acaagaacatatcactacgaaggtcggtcggtaaaggatatagggcctactgaactcctc
cctgatggcatcattccatctgatggcattgatatgactgaaatttgtgttcatccaaga
cataggaaacaaatgaaatctcaccaagttgagggatttaattttcttgttagcaacttg
ttgagagataaaggaggctgtatcatggctcacgcccctggatctggcaagactttcatg
ataatcagcttcctacaaagcttcatggctaataatgatagagctaggcctttggttgtg
ttacctagaggaatcttaggtacatggaagaaagagttcttgaggtggcaggtggatgaa
attcccctctatgacttctactcagtaaaagcggataatagatctcaacaattggaagtt
ctgaagcaatggtcacaggaaagaagtgttctgtttctaggctataagcagttctcaaca
attgtgtgtgacaatgttggtagtgcgactgcagctgcttgtcaggagattctgctgaag
tgcccgtcaattctcattcttgatgaagggcacactccgcgcaaccaagacactgatgtt
ttgacttcacttgagaaggtccagacacgcctgaaggtggtgctttctggcacattatac
caaaatcatgttaaagaggtctttaacattctgaaccttgtgcgtccaaaatttctcaag
ctggaaacatccagaagcattaaaaggacaatcctaagcaaagtggcaagctcaaataga
aggaacctcctgaagaaaagtaatgacaatgatttttatgagctggtggagcatacacta
ttaaaggatgacaatttctcaaggaagagtgctgttatactaggtctgcggaaaatgacc
gaaaaagtgcttcattattacaagggagatttcctcgaagaacttccaggattggtggat
tacactgtccttctaaagctccatcctaagcagaaaagtgaagttacagagctgaaaaaa
ctgggaaggaagttcaaaatcagctctgaaggaagtgcactgtatgtgcacccacaattg
aagagcctttcaagaaactgttctgttaaagatagagttgatgaagagaagattgatact
ctattagagaatttggaattgagggaaggagtgaaggcaaaattctacctgaatctgctg
cagctgtgtgaaacaaaaggtgaaaaaatgctagtgtttagccaatacctcctgcctttg
aaattcttggagaggttgactgttaagactaagggttacagtttggggaaggaattattt
atgatcaccggtgatacagacggggacgtcagggagtcctcaatggagcgatttaacact
tcaccggatgctcgtgttttctttggttcaattaaggcatgtggtgaaggaatatcactt
gttggtgcatcgcgaattatcatattggatgtgcatctcaacccatcagtaacccgtcaa
gcaataggacgtgcattccgaccagggcaggagaggaaagtatacacttacagattggtg
gcctcggagtcacctgaggaggaagatcatgcaacttgttttaaaaaggagtctattgca
aagttatggttcgagtggagtgagaattatgctcagcccgattttgagatggagactgtc
gatatcaacaactgtgaagatttgttcttggaatcatcacgtcttaatgaagatttggtg
gctctgtacaaaaggtag
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