Solanum stenotomum: 125868219
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Entry
125868219 CDS
T08385
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125868219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125868219
03110 Chaperones and folding catalysts [BR:
sstn03110
]
125868219
03029 Mitochondrial biogenesis [BR:
sstn03029
]
125868219
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sstn04147
]
125868219
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
125868219
Messenger RNA biogenesis [BR:
sstn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
125868219
Chaperones and folding catalysts [BR:
sstn03110
]
Heat shock proteins
HSP60 / Chaperonin
125868219
Mitochondrial biogenesis [BR:
sstn03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
125868219
Exosome [BR:
sstn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125868219
Exosomal proteins of other body fluids (saliva and urine)
125868219
Exosomal proteins of breast cancer cells
125868219
Exosomal proteins of colorectal cancer cells
125868219
Exosomal proteins of bladder cancer cells
125868219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
125868219
NCBI-ProteinID:
XP_049404810
LinkDB
All DBs
Position
6:53500994..53505971
Genome browser
AA seq
594 aa
AA seq
DB search
MSCCLNHLPAITLKNGSVNRISKRVSCSMLNTRAMAKELYFNHDGSTTKKLLAGVDLVAE
LVGVTLGPKGRNVVLGNKYGPPKIVNDGETVLKEIQLDDPLEYVGVKLVREAGAKTNNLA
GDGCTTSIVLARGLIAEGVKVTAMGANVVQVSRGIEKTAKALISELKLMSREVEDHELED
VAAVSAGNDYAIGNMISEALRQVGREGVVTIEKGNSTKTNLEVVEGMQFDRGYLSPYFVT
DRRKRIAELHDCKLLLVDKKISNPKELVKILDNAVKEKYPVLIIAEGIEQDALAPVIRNK
LRGVLKVAAIKAPSFGERKSHCLDDIAILTGGTVIRDDMGLTLENAHKDLLGSASKVVIT
KDSTLIVTDGNTRTAVSKRVSQIQNLIENTEEKFQKKILNERIARLSGGIAIIQVGAQTQ
VELKDKQLRIEDALNAARAATEEGVVVGGGCCLLRLSSKVDAIKEMLDNEDQKIGADIFK
RALSYPAKQIAKNAGVNGSIVVEKILSVDDMKYGYNAARDRYEDLMAAKILDPTKVVRCC
LEHAAAVAKTFLISDAVVIDIPEPVSRQIRPPPPPMPTSGPRLSGLSGLKATGL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgagttgttgtttgaatcatttacctgcaattactttgaaaaatggttcagtaaacaga
atttctaaaagggtttcttgttctatgttgaacacaagagctatggctaaagaattgtac
tttaatcatgatggttctacaacaaagaagcttttggcaggtgtggatttggtggcagag
ctggttggtgtaactttgggtccaaaaggaagaaatgtagttcttggaaataagtatggt
cctccaaagattgttaatgatggtgaaactgttcttaaagagattcagctggacgatcct
ctggaatatgtcggagtaaagttggttagagaagccggtgccaagactaataatcttgct
ggcgatggttgcacaacatctatagtgcttgctcgaggtctgattgctgaaggtgtcaag
gttactgcaatgggcgcaaatgttgtccaagtgtctcgtggaattgagaaaactgctaaa
gccctcatttctgagctcaagttgatgtccagagaggttgaggatcacgagttggaagat
gttgcggctgttagtgctggcaatgattatgccatcgggaacatgatttcagaagctctt
aggcaggttggaagagaaggagttgtcacaattgagaaagggaactctactaaaaccaat
ctagaagttgtcgaaggaatgcagtttgatcgtggctatttgtcaccttattttgtaact
gatcgacgaaagaggattgcggagcttcacgattgtaagttgcttttggttgataaaaaa
atttcaaacccgaaggagttggtaaaaattttggacaatgcagtaaaggagaaatacccg
gttttgataatcgcagagggcattgaacaagatgctctggctccagtgattaggaacaag
ctcaggggtgtcctaaaggtagctgcaataaaagctccatctttcggggagcgcaagagt
cattgcttagatgacatcgctatcttgactggaggaactgtgatcagagatgacatgggg
ttgactctcgaaaatgcccacaaggacttgttgggcagtgcttcaaaggtggtgattacg
aaagactctacactgatagttactgacggaaatacacgaacagctgtttcaaagagagtt
tctcagatacaaaatctcattgagaacacagaagaaaaattccaaaagaaaatcttgaac
gaaagaattgcaagattatccggtggtattgccatcattcaggtgggagcacaaacacag
gttgagttgaaagacaaacaactaaggattgaggatgccctaaatgcagctcgggctgct
acagaggaaggagtagtagtgggcggtggctgttgtctactgagactatcatcaaaggtg
gatgctatcaaagaaatgttggacaatgaggatcagaagataggagctgatattttcaaa
agagcactatcctatccggcaaaacagatagcaaagaatgctggtgtaaatgggagcatt
gttgtagagaagattttgtcagtcgatgacatgaaatatggatataatgctgcaagagac
agatatgaagatctgatggctgccaaaattttggatcctacaaaggttgttagatgttgc
ctagagcatgcagccgcagttgccaagaccttcctgatatcagatgctgttgttattgac
atccccgaaccagtatctagacaaataagaccaccaccaccaccaatgccaacttcaggt
ccaaggctctctggtctatcaggtcttaaggcaactggtctttag
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