Solanum stenotomum: 125868278
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Entry
125868278 CDS
T08385
Name
(RefSeq) exosome complex component RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125868278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125868278
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125868278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125868278
NCBI-ProteinID:
XP_049404867
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All DBs
Position
6:complement(4927788..4940691)
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AA seq
443 aa
AA seq
DB search
MEQRLGNTWRMTVNEKKFIESALESELRVDGRRPFDYRALTIKFGREDGSSEVQLGQTHI
MSFVTSQLVQPYRDRPNEGTLSVFTEFSPMADPSFEAGRPSESAVELGRIIDRGLRESRA
VDTESLCVVAGKWVWSIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEV
TLHPPEVREPLPLIVHHLPIAVTFAFIGDEHMVIDPTHHEEAVMGGRMSVTLNANGDVCA
IQKAGGHGVMQSVVMQCLRIASVKAGDITSKIKTVVESYKTERALRMVKRHAPINAVDVN
EPGGKAKQILEGQKLKSEECSASQSDDMDVEQGRINKRTDKNRSFTGGPSSWDPYSEGVN
TDELKATLASRGSVAVPMNLDNLGDTIRDETKSDEPLSDVNPVSSSTDSAGKEMATSKEK
TLQDAVKPKNKRKKKKSSNTAAV
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaagattgggaaatacatggcgaatgacagtgaatgagaagaagttcatagaa
tctgctttagaatctgaactaagagttgatggtcgccgtccttttgattatcgagccctc
actatcaagttcggcagagaagatggttcatcagaagttcaactagggcaaactcatatt
atgagttttgttacgtcgcaactagtgcaaccttatcgagatcgaccaaacgaaggaact
ctttcagtatttactgagttttcaccaatggcggatccttcttttgaggcaggtcgtcct
tcagagtctgctgttgagttgggtcgcattattgacagagggttaagggaaagtagggct
gtggacactgaatcactctgtgttgtggctgggaagtgggtgtggtcaattcgtattgat
ctccatattttggacaatggaggtaatcttgttgatgctgccaatattgctgctttagct
gcgcttttgacatttcggaggcctgaatgtacactaggaggagatgacgggcaggaagtg
acactgcatccacccgaggtgagggagccacttcccttgattgtacaccatctacctata
gcagtaacttttgcatttattggagacgagcatatggttatagatccaacacatcatgaa
gaagctgttatgggaggaagaatgtccgtcaccctgaatgcaaatggtgatgtctgtgca
attcaaaaagctggaggacatggtgtcatgcaaagtgttgtcatgcagtgtctacgcata
gcatcagtaaaagccggagatataactagcaaaattaaaacagttgttgaatcttataaa
acagagagagctctcagaatggtcaagcgacatgctcctattaatgctgttgatgtcaat
gaaccaggtggaaaggctaagcaaattttggaggggcaaaaattgaaatcagaagagtgc
agtgctagtcagagtgatgacatggatgtcgagcagggtagaatcaacaagaggactgat
aagaaccggagtttcacaggcgggccgtccagttgggatccatattcagagggtgtcaac
actgacgaattgaaagctactcttgcttctcgtggttcagttgcagtgcctatgaatcta
gacaatttaggtgatactattagagatgaaacaaaatcagatgaaccactttcagatgtt
aatccagtatcttcctcgactgactcagctggaaaagaaatggcaacgagcaaagaaaaa
actttacaagatgctgttaagcctaaaaacaagcggaaaaagaagaaatcatctaatact
gccgcagtttag
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