Solanum stenotomum: 125868394
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Entry
125868394 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125868394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125868394
03012 Translation factors [BR:
sstn03012
]
125868394
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125868394
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125868394
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125868394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
PhoH
ABC_tran
Myosin_head
AAA_23
Motif
Other DBs
NCBI-GeneID:
125868394
NCBI-ProteinID:
XP_049405015
LinkDB
All DBs
Position
1:complement(97215260..97233112)
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AA seq
1164 aa
AA seq
DB search
MHSRIGFLLACTKRRSSSSTLLLSTLFSSHQNRKIFAACHRRILIGSDVSKVYFFEESNL
RGLGQLRGFCRYPGIAALEQFSDDEYECDYENHPASSSVANVDEWKWKLSLLLRNEKDQE
IVSRDKRDRRDHEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPL
SLQRRVEGLLQEHIDRTQLSSGKDENILDVTKSSDIVTDANMDENPDSFLDGSVMEKVLQ
RRSLRMRNMQRGWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTT
QLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLEGVK
GKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLR
LILMSATLNAELFSSYFGGAPMIHIPGFTYPVRENFLEDVLEITGYKLTSFNQIDDYGQE
KMWKTQKQLAPRKKKNQITALVEDAVEKSNFENYSPRARDSLACWAPDCIGFNLIEAVLC
HICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFEK
PPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR
RGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSSAL
QPPESLAVQNAIQFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGTIFRCFDPVL
TIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYC
WRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTAINNKLSYNQSLVRAVICSGLYPGIS
SVVNRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDS
IVILFGSALDCGDMAGHLKMLGGYIEFFMDPTLADCYIKLKEELNILLQKKLQDPEIDIH
KEGKYLMLAVQELVSGDQSEGRFVFGRENKKPKDSDTDRFTRDGTNPKSLLQTLLMRAGH
SPPKYKTKHLKTNEFRALAEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKNHDED
DKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagaatagggtttctcttagcatgcacaaaaaggaggtcttcttcatctacg
cttcttctatctactctgttctcttctcatcaaaatcggaagatattcgctgcttgtcac
cgccggattttgatcggtagcgatgtaagtaaggtttatttcttcgaagaatcgaatctt
cgtggattgggacagctgcgcgggttttgtagataccctggtatagcagctttagagcaa
ttctccgacgatgaatatgaatgcgactacgaaaatcatccggcttcgtcatcagtggcc
aatgtagatgagtggaaatggaaacttagcctgctgttgcgcaatgagaaggatcaggaa
attgtatccagagataagcgggatagaagagaccatgaacagatatccaaccttgctaaa
aggatgggtctctatagtgaaatttatgggaaagttgtagtggtgagcaaggttcctctt
ccaaattacagacctgatcttgatgataagcggcctcaaagagaggtagtaatcccacta
agtctgcaaaggagagtagaaggtttgcttcaggaacatattgatagaacacaactcagt
agtggaaaagatgaaaacattttagatgttactaagtcctctgatatagttacagatgct
aatatggatgaaaatccagattcattcttagatggctctgtcatggaaaaggttcttcag
aggcggagcttacgcatgcgtaatatgcagaggggttggcaggaatctcctgatggcaac
aaaatgctagaattccggaaatctcttcctgcatttaaggaaaaagaaaggctgctccaa
gcaattgcacgtaatcaggtggtagtaatttctggcgagacaggatgtggtaagaccact
caactgccacagtacattctagagtcagagatagaatctggccgtggagcattttgtagc
ataatttgtacgcaacctcgaagaatatctgctttggctgttgcagaaagagtggctaca
gaaaggggagaacctcttggtgactcagttggttataaagtacgattagaaggggtgaaa
ggaaaaaatacacatttgctattttgtacaagtggtattttgcttcgtcgtcttctcagt
gaccgcaatcttgatggtataacccatgtttttgttgatgaaattcatgagcgaggcatg
aatgaagatttcctgttgattgtgttgaaggatcttctaccacgacgcccagatttgaga
ttgattttgatgagtgctactcttaatgctgaattattttccagttactttggaggagcg
cctatgattcacatcccaggcttcacatatcctgtaagagaaaattttctggaagatgtg
ctggaaattacgggatataagttgacttcattcaaccaaattgatgattatggccaggag
aagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcagataactgct
cttgttgaggatgctgtagaaaaatcaaacttcgagaattatagtccaagggcacgtgat
tcactagcatgctgggctcctgattgtattggattcaatcttattgaggcagttttgtgc
catatatgtcggaaagaacgtccaggcgctgtactagtatttatgactggttgggaagat
attagttgtttaagagatcaacttaaagcacatcctctcttgggtgacccaaatagagtg
ttggtgctcacttgtcatggttctatggctacctctgagcagaaactcatatttgaaaag
ccacctcagaatgtacgtaaaatagtacttgcaacaaatatggccgaggcaagtattact
ataaatgatgtggtctttgtggtggactgtggaaaagcgaaggagacgacttatgatgct
ctaaataatactccgtgcttattaccttcatggatttcacaagcttctgcacgacaaaga
aggggtagggctggccgtgtccaaccaggcgagtgctaccacttgtatccacgatgtgtg
tatgaagcttttgctgaataccaactacctgaactcctgagaactcctttgaattctctt
tgcttgcaaataaagagtttgcaggttggaagtattgctgaattcctttcgtctgcgctt
cagcctccagaatcattggctgtgcaaaatgctattcagtttttgaagatgattggtgca
ttagatgaaaatgagaatcttacacatctaggcaaatttttagcaatcctccctgtggat
cccaagcttgggaaaatgctcattatgggtactattttccgttgctttgatcctgttttg
actattgtggctggtcttagtgtacgggatccatttctgttgcctcaagataaaaaagat
ttagcggggacagcaaagtccagattctctgccaaggactatagtgaccatatggcactt
gtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctacgaatattgc
tggaggaatttcctctctgcccagactcttcaagctatccattctcttagaaagcaattt
atcttcatcttgaaagatgctgggttgcttgatgctgatactgcaattaacaataagcta
agttacaatcagtctttggttcgtgctgtcatatgttctggattgtatcctggaatttca
tcagtggtgaacagagagacatcaatgtccttcaagactatggatgatggacaagtcttt
ctttatgcaaattcagtcaatgctcgctatcaaacgattccatacccttggctggtgttc
ggtgaaaaagttaaggttaatacagtcttcatacgggattctactggagtatctgattcg
attgtgatcctatttggtagtgctctagactgtggagatatggctgggcatttaaagatg
ttgggtggatacatagagttcttcatggatcctactctggcggattgctacataaagctc
aaagaggagctcaatatacttttacaaaagaagcttcaagatcctgagatagacatccac
aaggaaggcaaataccttatgcttgctgttcaggaactggtttcaggagatcagtctgag
ggcaggtttgtgtttggtcgtgaaaacaagaagcctaaagattctgacactgatagattt
acaagggacgggacaaacccaaagagtttgttgcaaaccctacttatgagggccggtcac
tcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagggcactcgcagag
ttcaagggaatgcaatttgtaggtaaaccaaagagaaacaaagctcttgcagaaaaggat
gctgcaatagaggcactagcatggttaactcaaacatctgaaaagaatcatgatgaagat
gataaatctcctcctgatgtcaccgataacatgctgaaacttcttggtaaacgcaggaga
tcaaagcgtcgctga
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integrated database retrieval system
