Solanum stenotomum: 125868437
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Entry
125868437 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125868437
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125868437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125868437
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125868437
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
V-ATPase_H_N
Motif
Other DBs
NCBI-GeneID:
125868437
NCBI-ProteinID:
XP_049405042
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Position
6:6543363..6545349
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AA seq
307 aa
AA seq
DB search
MSNNLPASTFSERRYRTEQLIMNLRESSIREAVLIELNNFIIEQSTEAMRMDLGFHLWNS
ELTLTILLQEVVAVYPKLLDSTLAMAESARLCNALNVIQCMASHPNARIGLLKANIPYFL
YPFLRISENVMRPLQFVKLTILNLIAALAKFDESYGQEILLLLLDTQVFSLCLLCIHHGD
QLIRKIATLILMKILMQEKGLKYCCALPARFLLVIQVLHQLVDTFASEIPSSQQLKNVVQ
CYLSLSRVAWAGGVYDAVRTYFPLQLIDYKFGIIIRVSPSSYFFPQDPEIPIMLHQLELN
LTRQPPQ
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataatttgccggcgtcaacattttcagagcgtcgttacaggacagagcaattg
ataatgaatcttcgtgagagtagtattcgcgaagctgttcttattgaactcaacaatttc
atcatagagcagtcaactgaagcaatgcgcatggatcttggatttcacttgtggaactct
gaacttacactcaccatacttttacaggaagtagtagcagtgtaccccaagcttttagac
tcaacattagcaatggcggaatctgctcgactttgtaatgctcttaatgtaattcagtgt
atggcttctcacccaaatgcaagaatcgggctcctcaaagcaaacataccatattttctt
tacccatttctccgaatctctgaaaatgtgatgaggcctctgcaatttgtgaagcttacc
atcttgaatcttattgctgccctagcaaagttcgatgagtcatatgggcaagaaattctt
cttttattgctagacacacaagtattttctttatgcctgctctgcatccatcatggtgat
caactgatacggaagattgcaacactcatactaatgaaaatcttgatgcaagagaaaggg
ctaaaatattgttgtgctctccccgctcgttttctcttagtgatacaagtcctgcatcaa
ctggtagacacatttgcttctgaaatccctagttcacagcagctaaaaaatgttgttcag
tgctacctaagtctttcgcgagtagcatgggcaggcggggtatatgatgcagtgagaacc
tattttccactacagctaattgactacaagtttggcatcattattcgtgtgagtccatcg
tcttatttcttcccacaagatccggagattccaattatgctgcatcagttagagttgaat
ctaactcgtcaaccaccacaataa
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