Solanum stenotomum: 125870154
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Entry
125870154 CDS
T08385
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125870154
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125870154
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
NRDE-2
TPR_MalT
TPR_12
TPR_7
TPR_10
Motif
Other DBs
NCBI-GeneID:
125870154
NCBI-ProteinID:
XP_049406453
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All DBs
Position
7:complement(8518581..8533718)
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AA seq
824 aa
AA seq
DB search
MGESETVVAQTSSVTDYMSAGYSSINPDDAGAHASSDAGNAGDLATSCPNGPGESAATNV
EAGNPYTTDEVSTQQEAATAMAYDAIQDLAALADAPAGSSQVADYESSANGNTAEARDIA
AAGIAENGIASDVHGSSNMHRPEDGLAALSPEEERLWSIVRTNSLDFNAWTALIEETEKM
SEGNILKIRKAYDAFLAEFPLCYGYWKKFADHEARLGSGDKVVEVYERAVQGVTYSVDMW
LHYCVFAISTYGDPDTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQ
ILQNPNQQLDRYFEGFKELVASRPLSELRTPEEAAAAAAAEAEDEQIEGEVNPGSEPSKP
VSTSLKDAEELEKYISIREEMYKKAKEFDSKIIGFETSIRRPYFHVRPLNVAELENWHNY
LDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVSCMETSGSLDLADNALARATQVFVK
RQPEIHLFAAQLREQRGDIPGAQAAYQLVHAEISPGLVEAIIKHANMERRLGNLDDACTI
YEQAIAIEKGKEHSQSLPLLFAQYSRFLYLVSGKVEKAREILDQAVENVQLSKPLLEALI
HLESIQSLPKRVDLLDSLVDKFLVPSLENPNVASVDEREELSSIFMEFLDLFGDAVSIKK
ADDRHAKLFLRHRTSSDSKKRQAEDYIVSEKTKLAKSAVATTNPSVVGAYPGAQNQWPAG
YGVQGQTWPQATQAQSQQWNPGYAQQAAYGAYGSYGTGYAPPQAPAASVPSSAGYGVYPS
TFPAQAFPQQNYAQPAVAGAATAALTPAPQATTVPPTAYYGSYY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaagcgaaactgttgtagctcaaacctcgtcagtcactgattatatgtctgct
ggttattcgtcaataaatcctgatgatgctggtgcccacgcttcttctgatgctggaaac
gctggggatctggccacttcatgtccaaatggcccaggggagtcagcagctactaatgta
gaagctggaaacccttatactactgatgaagtgtcgacccagcaagaagctgcaactgct
atggcatatgacgcgatccaggatcttgcagctctagcagatgcacccgcaggttcatcc
caagttgctgattatgaatcttctgcaaatggcaacactgctgaagcaagagacattgca
gcagctggaattgctgaaaatgggattgcatcagacgttcatggaagttccaatatgcat
cggccagaagatggcttagcagctttatctcctgaagaggaaagattatggagcatcgtt
aggacaaattctttagacttcaatgcttggactgcccttattgaggagacggagaagatg
tcggagggcaacattttgaagattcggaaggcttatgatgcattcttggcagaatttcct
ctgtgttacggttattggaagaaatttgcagatcatgaggcacgtcttggctctggtgac
aaagttgtggaggtctatgaacgagctgttcaaggtgtgacatattcggtagatatgtgg
ttgcactattgtgtttttgctataagcacttatggagatcctgacaccattagaaggtta
tttgaaagaggattagtgtatgttgggacagactacctgtcctttccactttgggataag
tacctggagtatgagtacacacagcaggcttggtcgaatgttgctgctatctacacacag
atattgcagaatccaaatcagcagcttgatcgctattttgaaggtttcaaggagctggtg
gctagtaggcctctatcagagttacgaactcctgaagaagctgcagctgcagctgcagca
gaagctgaggatgaacagattgagggtgaggttaatcctggatctgagccttctaaacct
gttagtacaagcttaaaagatgccgaggagttagagaagtatatctccattagagaagag
atgtataagaaagctaaagagtttgattctaagatcattggttttgaaacatctataagg
aggccatattttcatgtgaggcctctgaatgtcgcagagcttgaaaattggcacaattat
cttgactttatagaaggaggagatgacttcaataaggtggtcaagctgtatgagagatgt
ttgattgcgtgcgccaattatcctgaatattggattcggtatgtttcttgtatggaaaca
agtggaagtttggatcttgctgataatgcccttgctcgtgccactcaagtctttgtcaag
aggcaaccagagattcacctttttgctgctcaattgcgggagcaacgtggcgatattcct
ggtgctcaagctgcatatcaacttgtgcacgctgaaatatcacctgggcttgtagaagca
ataatcaagcatgcaaacatggaacgtcgacttgggaatcttgatgatgcctgtaccata
tacgaacaagctattgccattgaaaaagggaaggaacactctcagagtctgccattgttg
tttgcacagtactctcggtttttgtacttggtttctgggaaggtggaaaaagctagggaa
attcttgatcaagcagttgagaatgtccagctgtcaaaaccacttctggaggcactaatc
catttagaatccattcagtcactcccaaagagagtagatttgttggattcattggttgat
aagttcttagttccatctcttgagaaccctaacgttgcaagtgttgatgaaagagaggaa
ttatcaagcattttcatggagtttctcgatctttttggtgatgcagtctcaattaagaag
gctgatgatcggcatgcgaaactcttcttacgccatagaacttcttcagattcaaagaaa
cgtcaggctgaagattacatagtttctgagaaaacaaagctggcaaagtctgctgttgca
acaaccaacccttcagtggttggtgcatatcctggagcacagaatcaatggcctgcaggt
tatggtgtacaaggtcaaacctggccacaggctacacaagcccaatcgcagcagtggaat
cctggttatgcgcaacaggcagcatatggtgcttacggcagttacggaactggctatgca
cctcctcaagcgcctgcagcatcagtcccctctagtgctggttatggtgtctatccttca
acattcccagcccaggccttccctcagcagaattatgcacagccagcggttgcgggcgct
gccactgctgctttgactccagcaccacaagctacaactgttcctcctacagcttattac
ggcagttactattga
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