Solanum stenotomum: 125870215
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Entry
125870215 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125870215 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125870215
03015 mRNA surveillance pathway
125870215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125870215
03041 Spliceosome [BR:
sstn03041
]
125870215
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125870215
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
125870215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
125870215
NCBI-ProteinID:
XP_049406547
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All DBs
Position
7:complement(33877600..33884257)
Genome browser
AA seq
890 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVKMDVMKPWIAKRVTELI
GFEDEVLINFIYSLLERKVANGKELQISLTGFMERNTGKFMKELWALLLSAQNNASGVPQ
QFLEAKEEEMRNKKAEMDRIANEIQKKKERENRELDQERRKKMDDYGSNLRQKNASREPT
PKQQLQVHLMDDLDPVERNGSRVRNRVSKSPRSADHSLFPRKSRSISKSFCNSRSYSGER
HRSQSTSGSPEERRCRSVSSERAYHSAPKCSVSPRRKHSPRQSHSPPRHRRRSTSRVRRR
SPSPARYRRHSPFRRRSRSPLRRRSRSPLRRRSRSPLRHRSRSPIWRRSRSPIWCRSRSP
SRRSPVRYRSRSPIKRRSPLRRRTPSPTQRKSPSPVSRGYHRSPLSPRQSSPFLVQRKPS
ISGRKRSLTPARRSLSSQESLSPSPIYRRSPSPIRKRISKNERSPVQSLRGRIRSREKYS
SVRYASPVKTEVHKGSRSLERRRPTSFGSPQKRIYDRKDSREKELPLPPQLSRSPSVPES
PRRSRSDSESPPTKRGRSPSEDRGPRSTLNRREIKTSDFDSLSPSKLREQKVSSDISEKI
ADQKEMNHSREAFEHKPRSSRKIPTTPDPYKDLGKGFVEKEFSDIHCRSDRLESRKRNEA
IKSERFSGTMEHTKELDKQKSPSTHRHSHSVKRLKESYDWESVKADKENLSHTNDTKGKE
LHVESEAPLTSSKKVEQNDLSSNEGSGFEESEKRRAKIKDKRKHKRSDRYESTSDDSSDS
DVEDRKEAKKRRKEERRLKKEEKRRRREERRRRKEERRSQKLKSKSANAISSPSDTERNP
DNHASDDEHLRKEGQHGREIGESESLQKRLEIELREKALESLRAKKGVSH
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggtttttttagggggacttctgctgagcaggacactcgcttctctaataag
caagctaagttgttaaaatctcagaagttcgctcctgaattggaacatctggtggacatg
acaaaggtcaagatggatgtaatgaaaccatggattgctaagcgagttactgagcttatt
ggtttcgaagatgaagtgcttatcaattttatttatagccttcttgaacgaaaggtagct
aatggcaaggagcttcaaatttcacttactggattcatggaaagaaacactggaaaattc
atgaaagagctttgggcattactacttagtgcacagaacaatgccagtggtgttcctcaa
cagttcctagaagccaaagaagaggaaatgagaaacaagaaggctgagatggatcgaatt
gcaaacgagattcagaagaaaaaggagagagagaacagggagctggatcaagagagaagg
aagaagatggatgattatggcagcaatttgagacagaaaaatgcttcacgggagccaact
ccaaaacaacagcttcaagtgcacttgatggatgatttagatcctgttgagagaaacgga
tcaagagtaagaaacagggtctctaaatccccacggtcagcagatcattcactcttcccc
aggaaatcaaggtcaatcagcaagtcattctgcaattcgaggagttactctggtgaaagg
cacaggtcacaaagtacatccggatctccagaagaaaggagatgtcgctctgtttcatct
gaaagggcatatcactctgcaccaaagtgttctgtttcacctcgtaggaaacattcacct
cgacaatcccattctccaccaaggcataggcgaagatcaacttctcgagtacgtcgaagg
tcaccttctcctgcaagataccgaagacattctccattccgacgtagatcaaggtctccg
cttcgacgtagatcaaggtctccgcttcgacgtagatcaaggtctccgcttcgacatagg
tcgaggtctcccatttggcgtagatcacgatcccctatatggtgtaggtcaaggtctcca
agtagacgctcaccagtgcgatacagatcaaggtcacctattaaacgtcgatcaccactt
cgacgcagaacaccatcaccaacgcaacgtaagtccccttctccagtgagtcgggggtac
caccgatctccattgagtcctcggcaaagttctccattcctagttcaacgaaaaccctcc
atttctggtaggaagagatccttaacccctgccagaaggtctctttcatctcaagaatca
ctttccccatcacccatttaccgcaggtctccttcaccaatcagaaagagaatatcaaag
aatgaaaggtcaccagttcaatctcttcgaggaaggataaggagccgtgagaaatactcc
tctgttcgatatgcttcaccagtaaaaactgaggtccataaaggatccagatctttggaa
cgtagacgtcctacttcttttgggtcaccacagaagaggatatatgaccgtaaggattca
cgagaaaaagagctgcctttgccgcctcagctaagccggtcaccatctgttccagaatct
ccacgtcgctctagatctgactcagaatctccaccaaccaaaaggggaaggagtcctagt
gaagatagagggccaaggagtactttgaaccggagggagataaagacaagtgacttcgac
agccttagtccaagtaaattgagagagcagaaagttagttctgacatttctgagaaaatc
gcagatcagaaagaaatgaaccattcaagggaggcttttgagcataaacctaggtcttca
agaaaaattcccacaacacccgatccatataaagatcttgggaaggggtttgtcgagaaa
gaattttcagacattcattgccgttcagatcgattggagtcgagaaagcgaaatgaagca
attaagagtgaaagattttcaggaactatggagcacacaaaggaactggataaacaaaag
tcaccatcaactcatagacactctcattcagttaaaaggttaaaggaatcatatgattgg
gagagtgtcaaagcagataaggaaaacctgtctcacacaaacgataccaagggcaaagag
ctacatgttgagtccgaagctcccctcacttcatcaaagaaagttgagcagaatgattta
agtagtaatgagggttctggtttcgaggaaagtgaaaagcgtagagctaaaattaaggat
aaaagaaagcataagaggtctgacagatatgagtcaacgtcagatgatagctctgattct
gatgttgaggataggaaggaggctaaaaagagaaggaaagaggagagaagattgaagaaa
gaggagaagcgtcgccggcgggaggagaggcggcgcagaaaggaagaaagacgttcccag
aaactaaaatcgaagtcagctaatgccatatcctcgccttcagatacagagaggaatcct
gataatcatgcttctgatgatgaacatctgaggaaagagggtcaacatggacgtgagatt
ggggagtcagagtccttgcagaaaagacttgagattgagctacgggagaaggctctcgag
tctcttagagcaaaaaagggtgtcagtcattaa
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