Solanum stenotomum: 125870217
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Entry
125870217 CDS
T08385
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125870217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125870217
03009 Ribosome biogenesis [BR:
sstn03009
]
125870217
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125870217
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125870217
Complex B
125870217
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125870217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4761
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
125870217
NCBI-ProteinID:
XP_049406550
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All DBs
Position
7:33800839..33829268
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AA seq
558 aa
AA seq
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MSYVPPHLRNSAAGKTTTTPTINSKGAEHFSSKHTSRIPSLEKSSNGYSNSARRSSINYS
LPNTVAVPDPTFPHWKPSERVLRLKSEQIEEIRLRLNVDVNVSPGSCPAPSPIESFPDMC
LDASIMKDIEKHGYTAPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQQ
PLQRGDGPLALVLAPTRELAQQIEKEVTAFSMSLDSFKTAIVVGGTNISEQRSELRAGVH
IVVATPGRLIDHLQQGNTSLSRIAFVVLDEADRMLDMGFEPQIREVMRNLPVKHQTLLFS
ATMPAEIEALAQDYLTNPVRIKVGKVSSPTANVSQILEKVPENDKIDRLLDLLVEEAAQA
EKSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHGGRSQNEREAALRDFRHGPINI
LVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMYLVA
QIRRAIADIGSGNDVTIAMGKTARRKEREAAAAEKEAWSELSKLSLVGSTVNVEDKYRHM
IAPSMIKKEGAADDAWDD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaattctgctgccggaaaaaccactaccacccct
actataaacagtaaaggcgccgaacacttctcttccaaacacacatccagaattccttct
ctcgaaaagtcttccaacggttactccaattcagctcgccggagctccatcaattactcc
ttgcccaacactgttgctgtccctgaccccacgtttcctcactggaagccttccgaacgt
gttcttcgtcttaaatccgagcagatagaagagattcgactgcggcttaatgtagatgtc
aatgtttctccaggctcatgtcctgcaccctcacctattgagtcatttcctgatatgtgc
ttggatgcaagtataatgaaggatattgaaaagcatggctacactgcaccgacttctatt
caggctcaagccatgcctgttgctcttagtggcagggatctcttggggtgtgcagaaact
ggtagtgggaagactgctgcattcagcatacctatgatacagcattgcctggctcaacaa
cctcttcaacgtggtgatggacctttggcattagtgttggcacctacaagagagcttgca
caacaaatagagaaagaggttacggctttcagcatgtctttggattcctttaagaccgca
atagttgtaggtgggacaaacattagtgagcagaggtctgagcttcgagcaggagtacat
atagttgttgctactccgggaagacttatagatcatttacaacaaggaaatacttccctc
agcaggattgcttttgtagttttggatgaggctgatagaatgcttgacatggggtttgaa
cctcagataagagaggtgatgcgaaatcttccggtaaagcatcaaacactgctctttagt
gcgaccatgccagcagaaattgaagcattggcacaggattacttgactaatcctgtgcga
ataaaagttggaaaagtaagcagcccgacagcaaatgtttcccagattttagagaaggta
cccgaaaatgataagattgatcgccttttggatttgctggttgaggaggctgctcaagct
gaaaaatctggccatcctttccctttgaccattgtatttgtggaacggaagacaaaatgt
gatgaagtagcagaagctttaacacagcagggtttgcttgcaactgcacttcatggtggt
cgaagccaaaatgaaagagaggctgctcttcgtgattttagacatggacctatcaatatc
ttggttgctactgatgttgcgtctaggggattggatgtcacaggagttgcacatgtaatt
aacctagatcttccaaagaccatggaagattatgtacaccggattggaaggactggtcgt
gcagggtcaacgggccgagctacttcattctatactgatcgcgatatgtatcttgtggct
caaataagaagagcaatagctgatattggttctggcaatgatgtgaccattgctatggga
aagactgcaagaagaaaggagagagaagctgcagctgcggaaaaagaagcatggagtgaa
ttgtctaagctctctttagtagggtccacggtaaatgtggaggataagtataggcacatg
attgccccatcaatgatcaaaaaggagggagccgcagatgacgcttgggatgactga
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