Solanum stenotomum: 125870218
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Entry
125870218 CDS
T08385
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03420
Nucleotide excision repair
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125870218
09124 Replication and repair
03420 Nucleotide excision repair
125870218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125870218
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125870218
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125870218
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125870218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EIPR1
WD40
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML_2
WD_LRWD1
WD40_WDHD1_1st
EIF3I
WD40_RFWD3
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
125870218
NCBI-ProteinID:
XP_049406551
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All DBs
Position
7:33160023..33167755
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AA seq
534 aa
AA seq
DB search
MRRRSLFPQVVIDRDTESEESSSEEEEEANVVLPEEERVQKGKTPITITLKKVCKVCKKS
GHEAGFRGATYIDCPMKPCFLCKMPGHTTVTCPHRVATEYGMVPAPHKNTTNPLEFVFQR
QLHPRLPPIKPAHVIPDQVHCAVIRYHSRRVTCLEFHPTNNNILLSGDKKGQLGIWDFGK
VYEKTVYGNIHNCILNNMKFNPTNDGSIYAASSDGTISCTDLETGISLSLMNLNPNGWEG
PSSWRMLYGLDVNSDRSVVLVADNFGYLYMADIRSNNKMSKPTLIHKKGTKVVGLNCNPL
QPDLLLSCGNDHFARIWDMRRLEAGSSLYNLEHKRVVSSAYFSPLSGSKILTTSLDNRIR
VWDSIFGNLDYPSREIVHSHDFNRYLTAFRAEWDAKDSSESLVVIGRYISENYDGAALHP
IDFINISTGQLVAEVMDPNITTISSVNKLHPREDILASGSSRSRFIWRPKKLDIALPREE
KRMVLCGEVSKKRNKKHGDESDDDSENDIFRSKDNSLKQKKLASKSSSYKSRRS
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaagaagtttgtttcctcaagtggtgatcgatagagacacggagtcggaggaa
agttcgtcggaagaagaagaagaagctaatgtagttttacctgaagaggagagggttcaa
aaagggaaaacacccatcactattactctcaagaaagtttgcaaagtttgcaagaaaagt
ggtcatgaagcaggcttcaggggtgcaacttatattgattgcccaatgaaaccatgtttt
ctatgcaaaatgcctggccacaccacagtcacttgcccccaccgagtagccacagaatat
gggatggtcccagcgcctcacaagaacacaactaatcctttggaatttgttttccaacgc
cagcttcacccccgccttcctccaatcaagccagcacatgtgatcccagatcaagtccac
tgtgcagtaatcaggtaccacagtaggcgagtcacatgcttggagttccatcctacaaac
aacaatattcttttatctggtgataagaaaggacaacttggcatctgggattttgggaaa
gtgtatgaaaagactgtatatgggaacatacacaattgtatacttaacaacatgaagttc
aacccgacaaatgatggatcgatatatgctgcttcatctgacggaacaatcagttgtact
gacctagagactgggatttcattgtcactaatgaaccttaatccaaatgggtgggaggga
ccaagcagttggaggatgctttatgggttggatgttaactcagacagaagtgtggtcctt
gttgctgataattttggatatctttacatggctgatatacggagcaataacaaaatgagc
aaacctactttgattcacaagaaaggaactaaagttgttggtctaaactgcaatcctctt
caaccagatctgcttttgagctgtgggaatgatcactttgctcgaatatgggatatgcgc
cgcttggaagctgggtcttctctatataatcttgaacataaacgtgttgttagttctgca
tatttttctccactaagtggaagcaaaatacttactacttcactggacaatcggattcgt
gtgtgggattcaatctttggcaaccttgattatccaagccgagaaattgttcatagtcac
gattttaacagatatcttacagcattccgagcagaatgggatgcaaaggactcatcagag
tctcttgttgtcattgggcgttacattagtgaaaactatgatggagctgctttgcatccc
attgactttatcaacatcagtactgggcagttggttgcagaggtcatggaccccaacata
acaactattagttcggtgaacaagctacatccacgtgaagatattctggcgtctggtagt
tcaaggtctcgtttcatttggaggcctaagaagctggacattgcactgccaagagaagaa
aagaggatggtattatgtggggaggtgagtaaaaaacgtaacaagaagcatggtgatgag
agtgatgatgattctgagaatgatatcttcagaagcaaggacaatagccttaagcagaag
aaacttgcatcaaaatcatcttcatataaatccaggagaagttaa
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