Solanum stenotomum: 125870272
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Entry
125870272 CDS
T08385
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125870272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125870272
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125870272
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
HECT type E3
125870272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
RAC_head
Motif
Other DBs
NCBI-GeneID:
125870272
NCBI-ProteinID:
XP_049406622
LinkDB
All DBs
Position
7:51401725..51412950
Genome browser
AA seq
1553 aa
AA seq
DB search
MGNRGQKRTENVDELPADKRPCSSTDFRPSTSNSVIPTTMSSIHESHHGDIDTSPSSSSS
TSGSSEGEKDSAYGSCESDNTYRDYYRRQLMGNQSKFNGVLESLSKESEESALLVALTEL
CDLLSFSPDSSMSNVMADLFSPVLVRLARYESNPEIMLLAIRAMTYLCEVHPRSSASLVN
HDAVPALCQRLRAIEFLDVAEQCLQALEKISREQPIVCLQSGAIMAILRYIDFFSTSEQR
KALLTVVNICKKLPSGCPPPLMEAVPVLCNLLLYEDRQLVESVATCLIRIVEQACHSSEM
LDQLCNHMLVQQVTHLIELNGRTTVSQSVYVGLIGLLVKLAAGSIVAVKTLFELNISHIL
KDILSTHDFSHGVPSTLMVDGHYNQVDEVLKLLNELLPPISREQNIKLAEDKEDFLINHP
DLLEKFGFHLLPVLIQVVNSGMNLNAWFGCLSVINKLVYFSKSDRLEFLQDTNISSFLAG
VFTRKDPHVLILALQIVDKLLEKLSHSFLDSFVKEGVLFAVDALLSPEKCSQSLFSTNGV
QASDEAGQGSVPPTAVNCLCFASDAVQSPTGPESRTCKIEKETVQSLARHIKTNYFATDS
MNPRLGITDVLQKLKTLSSQLTDLVHKFSSSIAPSQEKEDFYPVLHQIMSELNGNNAIST
FEFIESGVVKSLVNYLSNGQYLGKKVDGDVSVNQLYIIENRFELIGRLLLDNSGPLVENS
TFLALIRRLHSALCSVENFPVISHASKLRNSYATIPYGHCTPYPCLKVQFVKGEGESSLV
DYPESVVNVDPFSLLETIEGYLWPKVSRKKSEKLNPPTLDLEEESPSRVSQDVSTSQGKN
PGPMESDTTSTDSHETQVVKNNLQLFAEVETVDVEPTKSVPMDISDVNAESLKKGRLNSS
EDDSSTSLECTGCCDDENVAPKLIFYLEEQKWNHKLTLYQTVLLQQIKAENDITTNSSIW
SQVHRVTYRRFVRHKPGCPQSCKHAVHSTPSEKPTAWWQYTPSFSSMFGSEMVDFEKSSP
TYDILFLLRSLEGLNRFSFHLGSRTKLYAFAEGKTTNFGDIKVTNSDLPQNEFASTKLTE
KIELQMRNPFSVSIGGLPPWCEQLVNSCPFLFGFEARCKYFRLAAFGRQPIQPESSSHNT
AAGMSGRHQNSSVLRRKKLIVHRSRILDSARQMMELHANQKVVIEVEYNDEVGTGLGPTL
EFFTLVSHEFQKIGLAMWRGDHMAHGSVSVEEESGIIFSPFGLFPRPWSPSPHSLNGLEF
SEVLKKFVLLGQIVAKSLQDGRVLDLRLSRAFYKLLLGKELTVYDIPSFDPELGGVLLEF
QALVERKRHLESHPEGKSSLDLELNFRNTKIGDLCLDYTLPGYPDYVLNSASDAKTVDSS
NLEEYVLLVVDATLNSGISRQIGAFKSGFDQVFPIRHLQIFTEDELERLLCGECGFWNSN
ELLDHIKFDHGYTANSPPVLNLLEIMKEFDSKQQRAFLQFVTGAPRLPPGGLASLSPKLT
IVRKSCSVWVDADLPSVMTCANYLKLPPYSSKEKMKEKLLYAIMEGQGSFHLS
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaccgggggcagaaaaggactgaaaatgttgatgaactgcctgccgataagcga
ccctgtagctcaacagatttcaggcctagtacttccaactcagtgattcctactacaatg
agttccatacacgaaagtcaccatggtgatatagacacatcgccatcatcatcatcatcc
acttcagggtcaagcgaaggtgaaaaggactctgcttatggatcttgtgaatctgataat
acttatagggactattacaggcggcaattaatgggcaatcagagcaaattcaatggagtt
ttagaaagtttgagcaaagaatctgaagaatcagcactgttggttgctcttacggagcta
tgtgatttgttatcgttttctcctgatagttcaatgtcgaacgtaatggcagatttattt
tctcccgttcttgtaagattggctagatatgagagcaatcctgaaataatgctattagca
atcagggcaatgacttatttatgtgaagttcatcctcgttcttcggcctcccttgtcaat
catgatgcagttcctgccctttgccaaagactaagggccattgagtttttggatgtggct
gaacagtgtctgcaagcactagagaaaatctcgcgggagcaacctatagtgtgtttgcaa
tctggggctataatggccattttacgttacattgatttcttttcgacaagtgagcagagg
aaggcactcttaactgtcgtaaatatttgtaaaaagcttccctccggatgtcctccacct
ttaatggaggcggttcccgttttgtgcaatcttcttctatatgaggatagacagcttgtt
gagagcgtagcaacttgtttgattagaatagtcgagcaggcatgccattcttcagagatg
ctggaccaactgtgtaaccacatgctggttcagcaagtcacacatctcatagagttgaat
ggaagaacaacagttagccaatcagtttatgttggtttaattgggttacttgtcaaactg
gctgctggctctattgttgctgtcaagactctctttgaacttaacatcagccacatatta
aaggacattttatccactcatgacttctcacatggggtgccttctactctgatggttgat
gggcattataatcaggtagatgaagttctcaagttgttaaatgaacttcttcctcccata
tccagagagcagaatatcaagctagccgaagacaaggaagatttcctcatcaaccatccg
gatcttctggagaaatttgggtttcatttacttcctgtgctgatccaggtggtcaattct
ggcatgaatttaaatgcatggtttggctgtctctctgtcatcaataagttggtttatttc
agcaaatctgacaggcttgaatttcttcaagatactaacatttcaagcttcttagcagga
gtttttactcgcaaagatcctcatgttctgatactagcccttcaaattgttgataagcta
ctagagaagctctctcatagtttcttggactcatttgttaaggaaggtgttctttttgct
gttgatgcacttctttcccctgaaaaatgttcgcagtctctgttttcaaccaatggtgtt
caagcatcagatgaagccggccaaggatcagtaccacctactgcagtaaattgtctttgt
tttgcttctgatgctgttcagtctccaacaggaccagaatcaaggacttgcaagatagag
aaagagactgtccaaagtcttgctaggcatatcaagaccaattactttgcaacagactca
atgaaccccagattaggaataaccgatgttcttcagaagctcaagactctttcttctcag
ttaactgatctggttcacaaatttagtagcagcattgctccttctcaagagaaagaagac
ttttaccctgttttgcatcaaattatgtcagagttaaatgggaataatgccatttctacg
ttcgagttcattgagagtggagttgtgaagtctctagtaaattacctctccaatggccaa
tacttgggaaaaaaggtagatggtgatgtctcagtaaatcagctgtatattatagaaaat
agatttgagctgattggtagattacttttggataactctggcccgcttgtggagaactcc
acttttctagctttgataaggagattgcatagtgcactttgctctgttgaaaacttccca
gtcatcagtcatgcatctaagctacgaaactcatatgctacaatcccatatgggcattgt
actccatatccttgtctgaaggtccagtttgtgaagggagagggggagtcatcacttgtt
gattatccggagagtgttgtgaatgtagatcccttttcgctgttggaaacaattgaggga
tacctgtggccaaaagtgagtagaaagaaaagtgaaaagttgaatccacccactctggat
ttggaggaagagtcaccatctcgtgtatcacaagatgtaagcacgtctcaaggtaaaaat
ccaggacccatggaatcggacaccacttccacagattcccatgaaacgcaggttgtgaag
aataacttgcaactatttgctgaagtggaaactgtggatgtagaaccaacaaagagtgtt
ccaatggatatttcagatgttaatgcagagtctttgaagaaaggaagattgaattcatct
gaagatgatagtagtacaagtttggagtgtactggatgttgtgatgatgaaaatgttgca
cctaaattgatattctacctggaggaacagaagtggaaccacaagttgaccctatatcaa
actgtactcctgcagcagattaaagcagagaatgacatcactactaattcaagcatatgg
agtcaagtacacagggtgacctacagaagatttgtgagacataaaccaggatgtcctcag
agttgcaaacatgctgtacattctactccatctgagaaacctacagcatggtggcagtac
accccatctttctctagcatgtttggttctgaaatggttgattttgagaaatcaagtcca
acttatgatatcttatttcttcttagaagcttggaaggtttgaacaggttcagttttcat
cttgggtctcgaacaaaactatatgcttttgctgaaggaaagactaccaattttggtgat
attaaggtcacaaattctgatctccctcagaatgaatttgcaagcactaaattgacagag
aaaatagaactgcaaatgaggaatcccttttctgtttccataggtggtttgccaccttgg
tgtgaacaactggttaattcatgcccctttttgtttggtttcgaagcaagatgcaagtat
ttccgccttgctgcatttggtcgacagccaattcagcctgaatcatcgtctcataatacg
gctgcaggcatgagtggtaggcaccaaaacagtagtgttttacgccggaaaaaattaata
gttcatcgaagtagaattttggattctgctaggcagatgatggaactccatgccaatcag
aaggttgtcattgaggtggaatataatgatgaggttggtactggtcttggtccgacgcta
gaattttttaccttggtcagtcatgagttccagaagattgggctagcgatgtggagaggt
gatcacatggctcatggcagcgtgagtgtagaggaggaatctggaattattttctctcct
tttggtctgttcccccgcccatggtcaccttcaccccattcattaaatggcctagagttc
tctgaagtgctgaaaaagtttgtgcttctgggccagatagttgcgaagtctcttcaagat
ggcagggttctagatcttcggttatccagagcattttacaagcttcttcttgggaaggaa
ctcactgtgtatgacatcccgtcatttgaccctgaacttggtggagttctcctagaattt
caggctcttgttgaaagaaaaagacatctggaatcacatcctgagggaaaatcatcgtta
gacctagaacttaatttccggaatacaaaaattggtgatctttgtcttgactatactctt
cctggctatccagattatgtccttaattctgcatctgatgcaaaaacggttgactcctct
aacttagaggaatatgttttactcgttgtggatgctactctaaattctggaatttccaga
caaattggagcattcaagtcgggctttgatcaggttttccccatcagacatcttcagatt
ttcactgaagatgaattagagagactattgtgcggagagtgtggattctggaactccaat
gagcttctggatcacatcaagtttgaccatgggtacactgccaacagtcctccagtttta
aatttacttgaaattatgaaggaatttgacagcaagcaacagagagcattcctgcagttt
gtgactggtgcacctagactgcctccagggggtctggcatctcttagcccaaagttaaca
atcgttcggaagagttgcagtgtttgggtcgacgctgacctacctagtgtgatgacatgt
gccaattatctcaagctaccaccttactcttcaaaagagaaaatgaaggaaaagctgtta
tatgctataatggaaggacaaggctcattccatctttcatag
DBGET
integrated database retrieval system
