Solanum stenotomum: 125870423
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Entry
125870423 CDS
T08385
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125870423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125870423
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125870423
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125870423
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125870423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
125870423
NCBI-ProteinID:
XP_049406814
LinkDB
All DBs
Position
7:53946255..53954625
Genome browser
AA seq
1046 aa
AA seq
DB search
MEMEGSRRPFDRSRLEPGPKKPRLIEAPIGTERGSNGRSFIPQRGAGNSRIRASDRGGDS
ENSDSIRGSFQQQQQQQQQTQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLQAAKA
IAATICNNIIEVPTEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVEPSVHP
GMRHLFGTWKGVFPPQQLQLIEKELGFTTGVNGSSSGTSRPDPQAQRPAHSIHVNPKYLE
ARQRLQQSTKAKGAVSDISSTPNVNEDAERPERTTSVSSGRSWIDPSIKRAQKEKLNEHV
PEKTISAAYGDSDYVSDLSRGAAFGVGRGGERFKEQGFDKPWYDSGTGKILSQRSGLDIK
HGFQSIPQKSATSDAHPQLIPSLPNRTSTLTDRSWKNSEEEEYMWDDVNNAAKDRWASED
SDKSDLENQLRRPQSTREVGLRADSEASADSLSAEERGPASFGNQMSAMWSRESHALDGT
RHSASVQGAPVHPEGYQTSFSGLSKAANSVSRASYKLQTGSVHVGTPNIGPMNATLESRG
SIVQQGETLRAASPSAQSPMHQRSPSPSLITSNTNQVINSPGEQYQMQTSSRSDPRLSQI
SRRSNLDPRNQFAQESLAMPSRNTVSVNSQRQQPPSLQNSSALSSSHQLRHKVQRESLES
EYTGQTKNSTAPQISGFPDPSSTSSLLAAVLKSGVIGNKSSSGTTSSSLDKGALSSQASA
LPHPSQFSASGPRIPPASVTSLSMDRNASNPPNYSQRNVEQPPLPPGLPRTLVGSASLQM
PNALNTASSPLSSILSTLVAKGLISASKKDPPIYTPSDTPPQTQNLIPPASSISTPALSA
PISSSVPSSAPKDELSHSKPSAKTPEVLLQSTKEDAKSLIGLVFKPDVIRNSHPAVISDL
LDDVPHQCGICGFGLKLQEKLDRHLEWHSLRNPDVKLLNNSRKWYLNSGEWIAAFGGLPC
GDKSKGPAGGSSETSECAETMVPADECQCVCVLCGEFFEDFYNEESDEWMFKDAVYMSIP
SESYCQGPIVHKSCISESSCQELGLA
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagggttctcgtagaccatttgatagatcaagattggagccaggacctaag
aaaccaagattaatcgaagccccaattggaactgagcgaggttctaatgggaggagcttt
attcctcaacggggagctgggaattcgaggattcgagctagtgatagagggggagactcg
gaaaacagtgattcgattcgcgggtcttttcaacaacaacagcagcagcagcagcagaca
cagcatcaggagctagtgagtcagtataagacggctttagctgaactgacatttaattcg
aagccgataattacaaacttgactattattgctggtgagaatttgcaagctgccaaggca
attgctgctactatctgcaacaacattattgaggttcctactgagcaaaaattgccatct
ctatatcttttggacagtattgtgaagaacatcgggcgggattatattaagtattttgcc
accaggctacctgaggttttctgcaaagcttatagacaggttgaaccttcagtacatcct
gggatgcggcatctttttggaacttggaaaggagtattcccccctcaacaactgcaatta
attgagaaggagctcggatttactaccggtgtcaatggctcatcatcagggacatctagg
cctgatccacaggctcaacgacctgcacatagcattcatgtaaatccaaaatatctggag
gcacggcaacgcctacagcaatcaaccaaggcaaaaggagcagttagtgacatcagcagt
actcctaatgtaaatgaggatgcggagagaccagagagaacgaccagtgttagttctgga
agatcatggattgatccctccattaagcgtgctcagaaagaaaagttgaatgagcatgtt
cctgagaaaactatcagtgcagcatatggagattcggattatgtttctgatctatcaaga
ggtgctgcctttggagtaggaagaggaggcgaaagatttaaagaacaggggttcgataaa
ccttggtatgattccgggactggtaaaatattgagccaaagaagcggcttggacattaag
catggtttccaaagtataccccaaaaatctgcaacctctgatgcacatccacaactgata
ccgtccttaccaaatagaaccagtactttaacggataggagctggaagaattctgaggaa
gaggagtacatgtgggatgatgtaaataatgcagctaaagaccggtgggcatctgaggat
tcagataaatctgacttagaaaatcaattacggagaccacaaagcacaagggaggtcggg
ttaagggctgatagtgaagcctcagctgattctctttctgccgaagagagagggccagct
tcttttgggaatcaaatgtcagcaatgtggtccagggaatcacatgctttagatggaact
aggcattcagcttctgttcaaggtgctccagttcatccagaaggctatcaaacttctttc
agcgggttgtcaaaagctgcaaattcagtaagtagggcatcttacaagttacagacaggt
tcagtccatgttggaacgccaaatattgggccgatgaatgcaactctggaatccagggga
tccatagtgcaacagggagagactctcagagctgcctctccctctgctcagtcaccaatg
catcagcgttctccatccccatcgcttataacaagcaacactaatcaagtaattaatagt
cccggtgagcagtaccagatgcagaccagttctcgttctgatccaagactatcccaaatc
tcaaggaggtcaaatctagatccccgtaaccagtttgcccaggaatctctggcaatgcca
tctcggaataccgtttcagttaattcacaaagacaacagcctccaagtttgcagaattcg
tctgccttgtcttcttctcatcagttgagacataaggttcagcgggaaagcctggaatct
gaatatactggtcaaaccaagaattcaacagctcctcagatttcaggttttcctgatccc
tctagcactagcagtttgttggctgctgttttgaagagtggagtcattggtaataaatca
agttctggtactacatcgagttctcttgataagggtgctctgtcatcccaagccagtgca
ctgcctcatccctcccagttttccgcatctgggcctaggatcccaccggcctccgtcact
agtctatcgatggacagaaatgcttcaaatcctccaaattattcccagagaaatgtagaa
cagccaccattgccacctggtctacctcgaactcttgtagggagtgcatcattgcagatg
ccgaatgcactaaatactgcttccagtcctctttcaagtattttgagtacattggtggcg
aaggggttaatatctgcatcaaagaaagacccacctatttatactccttcggatacacct
cctcaaactcagaaccttattccacctgcaagctccatttcaactcctgctttatctgct
ccaatatcttcatctgttccttcttcagctcctaaggatgaactttctcactcaaaacct
tctgctaaaactcctgaggtcttacttcagtccacgaaagaagatgcaaaaagtctcatt
gggcttgtatttaagccagatgtgattcggaattcccatcctgctgtgatcagtgacctt
cttgatgacgttccacatcagtgtggaatatgcggttttggactaaaactccaagagaaa
cttgatagacacttggagtggcactcattgagaaatccagatgtcaaactgttgaataat
tcaagaaagtggtatttaaattctggggaatggattgctgcatttggtggcctcccttgt
ggtgataaatccaaagggccagctggaggttctagtgagacatcagaatgtgctgagacc
atggttcctgcagatgaatgtcaatgtgtgtgtgttttgtgtggtgagttttttgaagac
ttctacaatgaagaaagtgacgaatggatgttcaaagatgctgtttacatgagtattcca
agtgaaagttattgtcagggtccgatagtccacaagagctgtatttcagaaagttcttgt
caagagttggggcttgcctag
DBGET
integrated database retrieval system
