Solanum stenotomum: 125870758
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Entry
125870758 CDS
T08385
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125870758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125870758
Spliceosome [BR:
sstn03041
]
Common components
Common spliceosomal components
SR proteins
125870758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
125870758
NCBI-ProteinID:
XP_049407222
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All DBs
Position
7:1008324..1014425
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AA seq
308 aa
AA seq
DB search
MSRSSRTLYVGNLPGDVREREVEDLFHKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDA
IRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGRGQRGGGVSRRSDFRVLVTGLPHS
ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRAT
IRVKEYDRSRSRSRSRSRSRSYSKGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRS
RSVSSRSRSGSKGRPVSRSPSRSRSPAPARSKPLSKSPKRRTPSSSPKRRTPSRSPSRSR
SRSRSLSR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgt
gaagtggaagatctgtttcacaagtatggcccgatagctcatattgagctgaaaattcca
ccaagaccccctggttatgcttttgttgagtttgaagaggctcgcgatgctgaagatgct
attcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacat
ggcgggcgtggtaactcatcatcaaatgatcgttatggtggcggcggccgtggtcagcgt
ggtggaggagtgtccagacgttctgattttcgagtgttagttacaggattaccccattca
gcatcgtggcaggatctcaaggatcacatgcgtcgtgctggggatgtttgtttctcccaa
gttttccgtgatgggagtggcaccactggtataattgattatacaaactatgatgacatg
aaatatgctatcaaaaagcttgatgactctgagtttcggaatgccttttctcgtgcgaca
attcgagttaaggaatatgaccgcagtcgaagccgcagccgcagccgcagtcggagccgt
tcttactccaaaggaaagagtgttagtcgaagccgtagccgtagccgaagtagaagtcgt
agcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttca
aggtctgtgtcttctcggtctcgttctgggtcaaaaggacgtcctgtctcaagatctcca
tcaaggtccagatcgccagcaccagctcgttcaaaaccgttgagcaaaagtcccaaaaga
cgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtagg
agccgtagccggagtttgtccaggtaa
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