Solanum stenotomum: 125870797
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Entry
125870797 CDS
T08385
Name
(RefSeq) protein CHROMATIN REMODELING 5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125870797
03036 Chromosome and associated proteins [BR:
sstn03036
]
125870797
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125870797
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
125870797
SLIK complex
125870797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
125870797
NCBI-ProteinID:
XP_049407270
LinkDB
All DBs
Position
7:complement(3049313..3071321)
Genome browser
AA seq
1707 aa
AA seq
DB search
MAFYRNYSNETVTLDDKSQGEQSMQGIHQDVGNEEVEGSLSENDDNGQLQDEGGVEVETA
AEDQVPPGRGVNLSGKWGSGFWKDCQPMGPSGRSGSGEESKSGSEYKNEEESDEVSDGRE
DQLESEDEGRQKDMGKSRSVPADEMLSDEYYEQDGDDQSDSLHYRAANPSSGYSSKPQSR
PVSASKYASRKAKASKDQDDNEYADYEDDDSEDEDDPDDPDYGSTGRGKGIKDKDDDWEG
GESDEVNSDDDEVGISDEDEEYCRKPQGKQKNRGGHSVKSTRVVRSLATSARQKRGRTSY
EEGESSEHDSENESDEDFGNKPRRVANLRLKNSGRSSAASVSGRNSEIRTSSRRAVRKVS
YAESEESEEIDESKQKKGQKEELEEEDCDSIEKVLWHQPKGMAEEAARNNKSADPMLLSH
LYDSEPDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKRVMEDVKYRKTVS
REEIEVNDVSKEMDLDIIKLNSQVERVIADRISKDGYGNVVPEYLVKWKGLSYAEATWEK
DVDIAFGQDAIDEYKAREAAIMVQGKSVDFQRKKSRGSLRKLEEQPEWLKGGKLRDYQLE
GLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQEIHGPFLVVVPLSTLANWAK
EFRKWLPDLNVIVYVGARASREVCQQYEFYNDNKVGRTTKFDALLTTYEVLLKDKAVLSK
IRWNYLMVDEAHRLKNSEASLYTTLLEFNTKNKLLITGTPLQNSVEELWALLHFLDPDKF
KSKDDFVQNYKNLSSFNEMELANLHKELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQ
KQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDANYFGST
KLERIILSSGKLVILDKLLDRLHETKHRVLIFSQMVRMLDILAEYLSIKGFQYQRLDGST
KSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRA
HRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKETKKGSLFD
KNELSAILRFGAEELFKEDKNDEESKKRLLSLDIDEILERAEKVEEKGAEAEEGKELLSA
FKVANFCGAEDDATFWSRWIKPEATAHAEDALAPRAARNKKSYAEASPLVVTNKRKKGVD
AQERFPKRRKGDFSCTLPAIDGASAQVRGWSFGNLSKRDATRFSREVKKFGNDSQIDLIS
SEVGGAVEAAPTEAQVELFDSLIDGCREAVKGEVVDPKGPLLDFFGVPVKADELLGRVEE
LQLLAKRISRYADPVSQFRALAYLKPATWSKGCGWNQKDDARLLLGIHYHGFGNWEKIRL
DEKLGLMKKIAPVELQHHETFLPRAPQLKERASQLLQMEVAAVGGKNTSLKVGRKTSNKQ
KESLPSTTAPLGKGKQSKLSSSGNAKMGRGRAAKGQKKVEPLVKEEGEMSDNEEVYEQFK
EVKWMEWCEDVMMYEEKTLKRLQRLQTTSADLPKDKVLAKIRNYLQLLGRRIDQIVFEYE
NESHKQERMTVRLWNYVSTFSNLSGEKLRQIYSKLKQEQHVEGRVGPSQFNGSAPAHPTP
GFIPRGFDAAKFEAWKRRKRAEADVHSQVQPQHQRALPNGTRLPEPNLSSGILGAAPLDS
KQSGNGRPYRTHQSGLPQRPGFSSGPR
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggctttttataggaattactcgaatgaaacggtaacgttggatgacaaaagccaaggg
gaacaaagtatgcagggaattcatcaggatgtaggaaacgaggaagtggaaggtagtttg
agtgaaaatgatgataatggtcaattacaagatgaaggtggtgtagaagtggaaacagct
gcggaggatcaggtgccgcctggaagaggagttaatttgtctgggaaatggggttctggg
ttttggaaggattgtcaaccgatgggcccctcaggtaggtctggttctggtgaggagtcg
aagagtggatcagagtataagaatgaggaggaatctgatgaggtatctgatggtagggaa
gatcagttggagtcggaagatgaaggaaggcagaaagacatggggaagagtcgaagtgtt
cccgctgatgagatgttatctgatgaatattatgaacaagatggtgatgatcagagtgac
tcgttacattacagagctgcaaacccttcaagtggttatagttcaaagccccagtcgagg
cctgtttctgccagcaagtatgcaagtcggaaagcaaaagcttcaaaagatcaggatgac
aatgagtatgctgattacgaggacgatgacagtgaggatgaagatgatccagatgatcct
gactatggtagcacaggccgtggaaagggcattaaggacaaggatgatgactgggagggt
ggagagtctgatgaggtcaacagtgacgatgatgaggtgggcatctccgatgaagatgaa
gaatattgcagaaaacctcaaggcaagcaaaagaataggggtgggcatagtgtaaaatct
accagagtagttaggtctcttgctacatctgctcgacagaaaaggggtagaacatcatat
gaagagggagaatcatcagaacatgattctgaaaacgagagtgatgaggattttggaaat
aagcctagaagagttgcaaatctccgccttaaaaatagtggtagatcttctgctgctagt
gtatctggcaggaatagtgaaatccgaacttcgagtcgtcgggcggttcggaaagtttca
tatgcagagagtgaagagagtgaagaaattgatgagagcaagcaaaagaaaggccaaaag
gaagaacttgaagaggaagattgtgactcgattgagaaagttttatggcatcagccaaag
ggcatggctgaagaagctgcaaggaataacaaatcagctgatcctatgttgttaagtcat
ttgtatgactctgaaccagattggaatgagatggagtttttaataaaatggaaaggccag
tctcatttgcattgtcaatggaagtcatttgttgagctacaaaatcttagtgggtttaag
aaggttttgaattacactaaaagggtcatggaggatgtgaagtataggaagactgtatcc
cgtgaggagatcgaggtaaatgacgtgagcaaggaaatggacttggatatcatcaaactg
aacagtcaggttgagagagttattgcagacagaatcagcaaagatggttatggtaacgtg
gtgccagaatatttagttaaatggaaagggctatcttatgctgaagcaacttgggagaag
gatgttgatattgcttttggtcaagatgccatcgatgagtacaaggctcgtgaggctgcc
attatggtacaagggaaatcagtggatttccagcgcaaaaagagcagaggtagtttgagg
aagcttgaagagcagcctgaatggttaaagggtgggaaacttcgagattatcagcttgaa
ggcttaaattttctggttaatagttggaggaatgatactaatgttatattagctgatgaa
atgggccttggcaaaactgttcagtcagtttcaatgctcggttttcttcagaatgctcag
gaaattcatggaccatttcttgttgttgtcccattatcaactctcgccaattgggcaaaa
gagtttaggaaatggctgcctgatctgaacgttattgtctatgtcggagcacgtgcaagt
cgtgaggtctgtcaacaatacgaattctacaatgataataaagttggcaggactaccaaa
tttgatgcactgcttactacttatgaggtactattgaaggacaaggctgtgctttcaaag
ataaggtggaactaccttatggttgatgaagcgcacaggttaaagaacagtgaggcttct
ctttatacaacacttctggagttcaacacgaagaacaagttgcttattactggtactcca
ttgcagaacagcgttgaagaactatgggccttactccactttcttgatcctgataagttc
aagagcaaggatgattttgtccagaattataagaatcttagttcatttaatgaaatggag
cttgcgaatcttcacaaggaattgaggcctcacattctcaggagggtcataaaagatgtg
gagaagtcacttcctccaaagattgaacgaattcttagggttgagatgtcaccactacag
aaacagtattacaaatggatcttggaaaggaattttcaagacttgaataaaggtgttcgt
gggaatcaggtttcacttttaaatattgtggtggagttgaagaaatgttgcaatcacccc
tttttatttgaaagtgcggaccatggttatggtggggatgcaaattattttggcagcaca
aaattggaaagaattatacttagcagtggtaagcttgttatacttgacaagctgctggac
agattgcatgaaacgaagcatcgagtgttgatattttctcagatggttaggatgcttgac
atactggcagaatatttgtctatcaaaggattccaatatcaacggcttgatggtagtaca
aagtctgagttgcgccagcaggctatggaccacttcaatgcacctggtagtgacgatttc
tgttttcttctgtcgacacgagctggtggattgggtataaatctagcaacagcagacact
gttatcatatttgattctgattggaatccccaaaatgacttgcaggcaatgagtagagct
cataggataggacaacaagaagttgtcaacatctacagattcgttacaagtaaaagtgtg
gaggaagatatcttggaacgtgctaagaagaagatggttcttgatcatctggtgattcaa
aaactgaatgcagagggtaaattagagaagaaagaaaccaagaaaggaagtctctttgat
aagaatgagctctctgccatcttgaggtttggcgctgaggaactatttaaggaagacaaa
aatgacgaagaaagcaagaaaaggcttctcagtttggatattgatgaaattcttgaacgg
gctgaaaaggttgaagagaaaggagctgaggcagaggaagggaaggagttgctgagtgct
tttaaggttgccaatttctgtggtgctgaagatgatgcaactttttggagtcgatggata
aagccagaagctactgcacacgctgaagacgctttggctcctcgagctgctcgaaataaa
aagagttatgcagaagctagccctctggtggtaactaataaaagaaagaagggtgttgat
gctcaggaaaggttcccgaagcgtcgcaagggagattttagctgcacacttccggcaatt
gatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgcc
acacgtttttctcgtgaggtcaagaagtttggtaatgatagccaaattgacttaatatca
tcagaggttggtggggcagttgaagcggcgccaactgaagctcaagttgagctttttgac
tcattaattgatggctgtagagaagcagttaaaggtgaagttgttgacccaaagggacct
ctcttagatttttttggtgttcctgtgaaggctgatgaactattgggccgtgttgaggaa
cttcaactcctagcaaagcgcatttctcgatatgcagatcctgtctcgcagttccgtgct
ttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgac
gccagactgcttcttggaattcattatcatggatttggcaactgggaaaagatacggtta
gatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcatgagact
ttcttgccaagagctccgcagttgaaggagagagcttctcaacttctgcaaatggaagtt
gcagctgttggtgggaagaacactagtttaaaagtgggccgtaagacttccaacaagcag
aaggaaagccttcccagcaccacagcacctcttggaaagggtaaacaaagtaaattaagc
tcatctggaaatgctaaaatgggtagaggcagagctgctaaaggtcaaaagaaggttgaa
ccgttggtcaaagaggaaggtgaaatgtcagataatgaggaagtttatgagcagtttaaa
gaggtgaaatggatggaatggtgtgaagatgtgatgatgtatgaggaaaagacgcttaag
cgtcttcaaagattgcaaactactagtgctgatctccctaaggacaaggtgttggccaaa
atacggaactacttgcagcttcttggtcgcaggattgatcaaatagttttcgaatatgag
aatgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattt
tcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaaacaggagcaacat
gtagaaggacgggtaggaccgtcgcaatttaatggttctgcacctgcgcatccaacgcca
ggttttattccccgaggttttgatgcagctaaatttgaagcatggaaacgaaggaaaaga
gctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgcctaatggt
acacgccttcctgaacccaacttatcatcagggattcttggcgcagctcctttagatagc
aaacagtcaggtaatggtaggccttacagaacacatcagtctggcctgccccagagacca
ggtttctcgtccggtcccagatag
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integrated database retrieval system
