Solanum stenotomum: 125870990
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Entry
125870990 CDS
T08385
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125870990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125870990
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125870990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
DUF5500
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
125870990
NCBI-ProteinID:
XP_049407516
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All DBs
Position
7:3527635..3531655
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AA seq
395 aa
AA seq
DB search
MDSDEGKLFVGGLGWDIKEDKLRDYFTHYGEVTHAIIMRDRVTGLSRGFAFVVFSDPSVI
DAILQEKHTIDGRPVEAKRALPRAQQQSLRSRLPHASEDTRLVMRNLNNRTRKIFVGGLP
SSLTEEEFCQYFQDYGNVTDKVIMFDPNTGRPRGFGFITFDSEDAVDRVLHKTFHELKNR
IVEVKRALPKEANPAGNDYGGGYLGYGSSDPYRFPQPAFCGYTPYNSYGALNYGYGYDPY
TCYGGAAGVYMNPSLASIVYGNSWPGVARSQWSSQNLGHGDFYNLNASYGASSLWGASSI
RGVILSSTSTSQGHASQNNNQGNGCSIYTENEGPITDSDGNETGDRHTGSAPNSSSGEAT
AQAGQHEANGCNTTTVFDSSNGSPGFPDADLVSDK
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggattccgatgaaggaaagctatttgttggtggattaggatgggatattaaggaagat
aagctaagagactattttacccattatggagaagttacccatgccataatcatgcgtgac
agggttactggcttatcgagaggattcgcctttgttgtcttctccgatccttctgttatt
gatgccattcttcaggagaaacacactattgatggccgtccggttgaagctaagagggct
ttaccaagagcacaacagcagagcttgagatcgcgacttcctcatgccagtgaagataca
agactggtaatgcgcaatctcaacaacagaacaagaaaaatatttgtaggtgggctacct
tcatcccttactgaagaagagttttgccagtacttccaagattatggtaatgtgacagat
aaagttattatgtttgacccaaacactggtcgcccgcgaggatttggtttcatcaccttt
gactcagaagatgctgttgatagagttcttcataaaacctttcatgaactgaaaaatagg
atagtggaggtaaaacgtgccctgccaaaagaagcaaatcctgctggcaatgattatggt
ggaggttacctgggttatggttcttctgatccctataggtttccgcagcccgctttttgt
ggttacactccctataacagctacggagctctgaattatggttatggttatgatccttat
acttgctacggtggggcagctggagtatatatgaatccatctttggccagcattgtttat
ggtaacagctggcctggtgtcgcaagaagccagtggagcagccagaatcttgggcatggt
gatttctataatttaaatgcaagttatggcgcttctagtttgtggggtgcttcatccatt
cgtggtgttattttgtcatcaactagtacatctcagggtcatgcttctcaaaacaataat
caggggaatggttgcagcatctacacagaaaatgaaggccctatcactgattctgatggt
aacgagactggtgataggcatacaggtagtgctccaaacagcagcagtggtgaggcaact
gcccaggcagggcaacacgaggcaaatgggtgcaacacaacaacagtctttgacagcagt
aatggttctccaggctttcctgatgcagatttagtttccgataagtaa
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