Solanum stenotomum: 125871161
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Entry
125871161 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125871161
KO
K08518
syntaxin-binding protein 5
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125871161
Membrane trafficking [BR:
sstn04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
125871161
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
125871161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_VPS8
ANAPC4_WD40
Beta-prop_THOC3
WD40
Lgl_C
WDR55
Synaptobrevin
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR5
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
NBCH_WD40
KNTC1_N
ABC_tran_Xtn
Motif
Other DBs
NCBI-GeneID:
125871161
NCBI-ProteinID:
XP_049407712
LinkDB
All DBs
Position
7:complement(45232342..45252218)
Genome browser
AA seq
1114 aa
AA seq
DB search
MFAKKLFQKATQYHHNHHHQTNGSGLTASDLNVRATVHYGIPSTASILAVDSVQRLLAIG
TLDGRIKVIGGDNIEGLLISPKQLPYKYLEFLQNQGFLVSITNENDIQVWNLKSRSVACD
LQWESNITAFSVINGSSFMYVGDEYGTISVLKFHVENRELLQLPYQILWSSLSEATGFPY
SDHQPVVGILPQPFTSGNRLLIAYECGLIILWDVVEAHVIIVKGDKDLHLKDDALNFKKN
ADSSSPDDLMQHQLEEKEITTLCWASTDGSILAAGYIDGDILLWKTSKSTASKGQEAGPF
DNVVKLQLSSVEKRLPIIVLHWWANSKSRNNSDGHLLIYGGDEIGSDEVITILTLEWSSG
IETLKCVGRVDLTLSGSFADTILLPTTGATSPDEKAVLFVLMSPGQLNLFDCSTLSDLVS
KEEKKVSLSAKDFPVELPTVDPSMTVTKLTQLHSDGNLTELLQETPFFKKLSAATSSGAS
RWPLTGGVYNHTSRAETNRIQRVFIAGYQDGSVRMWDATHPVLLLLCVLDREVKGVNTVI
SSASVSKIDFCFQTLRLAVGDASGLVRLYDFKHSDMGNFHVVTGTKSEVHELAQGQGPTC
RAVLKLLDVRVRAIEFVNHGAKLAVGYENAKVAVLDMTSLSVLFLSDSASVGSSPLVTLI
AKRFVHSDSNSKSPKQSELPENRMEELMFILTEDAKIYVIDGGNGKTYGSGPLHLKKVST
AISMYVIENNIPFSDVISKQPESSKDEATSNEPSQEMTTHDLSDTVPFLENDPSRKHFEE
SFILLCCKDSIRTYATKSVVHGDNKSVCKVMLDKPCCWTTTFVKDGKDGKACALLLLFQT
GDIEIRSLPDLELLERASLMSVLSWNFKPNMDRAMSSMENGHITLANGSELAFVSLLASE
NDFRIPESLPSLHDEVLAAAADTAMKFSTQKKKQGGAPNILGTLVKGFKAGKTNHNMDFS
QMSQSNFSHLEGVFMKNPLHPEPSPTKEVLEELELDIDDIEIDEPVPVASSSSHNTQNSK
IGTEREKLLDSEGDDAKPRLRTREEIIAKYRKTGVQDASSAAGQARDKLLERQEKLERIN
RRTEELRSGAEDFASLANELVKVMENRNRKWWQI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgaagaagctttttcagaaagccacacaatatcatcataatcatcaccaccag
acaaatggaagtggtttgacagcaagtgacctgaatgttcgtgctactgtacattatggt
atcccgtcaaccgcatcaattcttgcagtagactctgtccagcgcctattggctattgga
acattggatggtaggataaaagtgattggtggagacaatattgaaggtctcttgatttct
ccaaagcagttgccatacaaatatttagagttccttcaaaatcagggctttcttgtcagc
atcacaaatgaaaatgatattcaggtttggaatctcaaaagcagatctgtagcttgtgat
ttgcaatgggaatcaaatataactgccttttcagttatcaatggctcttccttcatgtat
gttggagatgaatatggaacaatctcagttttgaagttccatgttgagaacagagaactg
ctgcaactgccatatcagatcttatggagttctctttctgaagcaactggttttccgtat
tcagatcatcaaccagttgttggaattctcccgcaaccttttacatcgggaaatagatta
ttgattgcatatgagtgtggtttaattatactttgggatgtcgtcgaagcccatgttatc
attgtcaaaggtgataaagatctccatttgaaggatgatgctttaaactttaaaaagaat
gcagattccagctctcctgatgatctaatgcagcaccaattagaggagaaagaaataact
acactttgctgggcatccactgatggatccattcttgctgctgggtacatagatggagat
attctgctttggaaaacatcaaaatcaaccgcaagcaaaggtcaggaggccggaccattt
gataatgttgttaagctacagctgtcttctgttgaaaagaggcttccaattattgtctta
cactggtgggcaaacagtaaatcccggaataatagcgacggccatctcctcatttatggc
ggtgatgaaataggatccgatgaagtcattacgatccttactcttgagtggtcatctgga
atagagactttgaaatgtgttggtcgtgttgacctcactcttagtggctcatttgcagat
acgatcttattaccaactacaggggcaacatcacctgatgaaaaagctgttttatttgtg
ttgatgagccctggacaactaaacctttttgattgttcaaccttgtctgacttggtatcc
aaagaggagaaaaaagtatctctatcagctaaggattttcctgtagaattgccaactgtt
gatccttccatgacagtgacaaagcttacccagttgcattcagatggaaacttaacagag
cttctgcaagagacacctttcttcaagaagctctccgcagcaacatcatctggggctagc
agatggcccttgactggaggggtgtataatcatacttctcgagctgagactaacaggatt
cagagagtttttatagcaggttatcaggatggatccgtaaggatgtgggatgccactcat
ccggtcctccttctcctttgtgtcttggatagagaggttaaaggtgtaaatacagttata
tcaagtgcttcagtttcaaaaatagatttctgcttccagacattaagattggcagttggg
gatgcaagtggcctggtgcgtctttatgatttcaaacatagtgatatgggaaacttccac
gttgttactggtactaaaagtgaagttcatgagttggcacaaggtcaaggacctacttgc
agagctgttctaaagcttctcgatgttcgagtccgagcaattgagtttgtaaatcatgga
gccaaacttgcagttggatacgaaaatgctaaggttgcagtgcttgatatgacttcatta
tcagtattgttcttatcagactctgcatctgttggtagctctccactggtgactttgatt
gcaaagagatttgtgcacagtgacagtaatagcaaaagcccaaaacaatcagagcttcca
gaaaaccgtatggaggaactcatgttcattttaactgaggatgcaaagatctatgtaatt
gatggtggtaatggtaaaacgtatggttcagggcccttgcatttaaagaaagtgtcaact
gcaatttctatgtatgtcatagaaaacaacatcccattttccgatgtaattagcaagcag
ccagagtccagcaaggatgaggcaactagtaatgagccttcacaagaaatgaccactcat
gatctaagtgacacggttcccttcctagaaaatgacccctccaggaaacactttgaggag
tcctttatcctactttgctgtaaagattcaatacgcacttatgctactaaatctgtagtt
catggggataataaatctgtttgcaaagtgatgctcgacaaaccttgttgttggactact
acttttgtgaaagatggcaaagatgggaaagcttgtgcgctactattactctttcagact
ggagatatcgagattcgatctttgcctgatctagagttgctggagcgggcctctttaatg
tcagtattaagttggaatttcaagccaaatatggacagggcaatgagttccatggagaat
ggccatattactctggcaaatggttctgaactggctttcgtgtccctattagctagtgaa
aatgatttcagaattccagaatctttgccgtctcttcatgatgaagtgctcgcagctgca
gcagatactgccatgaaattctccactcagaagaagaaacagggtggggccccaaatatt
ttaggtactctagttaaaggatttaaagcgggaaagacaaatcataatatggatttcagt
cagatgtcgcagtcaaactttagtcatctggaaggtgtttttatgaagaacccactccac
ccagaaccgtccccaactaaggaagttctagaagaactggagctcgatatagatgatatt
gaaattgatgaacctgttcctgtggcttctagttcatctcataacacacaaaatagtaaa
ataggaactgaaagagaaaaattgcttgattctgagggtgatgatgccaaacccagactt
aggacacgtgaagaaatcatagcaaaatatagaaaaactggggtccaggatgcatcatca
gcggctggacaagcaagagataagcttttagaacgccaagaaaaactcgagagaattaac
cgaagaactgaagaactacgcagtggggctgaagattttgcatcattggcaaatgagctt
gttaaggtaatggaaaatcgcaatcgaaaatggtggcagatatga
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