Solanum stenotomum: 125871170
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Entry
125871170 CDS
T08385
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125871170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125871170
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125871170
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125871170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125871170
NCBI-ProteinID:
XP_049407725
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Position
1:93838935..93839756
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AA seq
273 aa
AA seq
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MDVNGVDPNRYPILIREVWADNLKKTFEEISDSIDKFPYISMDTEYPGRIYNSPVPFSQQ
SPAEKYNVLKLNVDELKLIQVGITLSDANGNLPELVIKGERFRVVWQFNFSDFNRMYDPY
VEASIQLLVDSGIDLQRNLDFGIRSIDFGELLMSSGLVCNDSVSWVTFQGEFDIAFLLKI
LRGRNLPDSLDEFFEFVKMFFGDKLYDVKRLTIYIPNLHGGLAWVAENLGLAREAGRQHQ
AGSDSLLTCHIFYSMRNGFEDGVPDAGVLHGLT
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggatgttaatggagtagatccgaatcgatacccgattctgattcgagaagtatgggct
gataatctcaaaaaaacattcgaagaaatttctgattcaattgataaattcccctatatt
tcgatggatacagagtatcccggcagaatctacaattccccggtacccttttcgcagcag
tctccggcagagaagtataatgtgttgaaattgaatgttgatgaattgaaacttattcaa
gttgggattaccctttctgatgctaatgggaacttgccggaattggtaattaaaggggaa
cggtttcgtgttgtatggcagttcaacttttccgatttcaatcggatgtatgatccctac
gtagaggcctcaatccagctccttgtagacagtgggattgacttacaaaggaatctagat
tttgggattagatcaattgatttcggtgagttgttgatgtcgtcggggcttgtatgcaat
gattcagtgagttgggtaacgtttcaaggcgaatttgatattgcattcttgttgaagatt
ctcaggggccggaatcttccagatagtttagatgagtttttcgaatttgttaagatgttt
tttggagataaattatatgatgtgaagcgtttgacgatatatattcctaatcttcacggt
ggtttagcctgggtggcggaaaatctcggtttggccagggaggctgggaggcaacatcag
gctggttcagatagtttgttgacgtgtcacatcttttatagtatgagaaatggttttgaa
gatggtgtgccagatgccggcgttttgcatggattaacttga
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