Solanum stenotomum: 125871228
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Entry
125871228 CDS
T08385
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125871228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125871228
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
125871228
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
125871228
NCBI-ProteinID:
XP_049407787
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Position
1:complement(93206468..93217445)
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AA seq
200 aa
AA seq
DB search
MVSSAIVNTYPLSSYTFGTKEHKMEKDTSVADRLARMKVNYMKEGVRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANPPANQPNWKIGECVATWW
RPNFETIMYPYCPPHITKPKECKKLYLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRLQFNMIHQ
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtctcgtcggctatagtgaacacatacccactctctagctatacatttggtacaaaa
gagcataaaatggagaaggatacatccgttgccgatcgccttgctcgtatgaaagtcaac
tacatgaaggagggagtaaggacaagtgttgaaggaattctcttggtacaagaacataac
catcctcatattcttcttctgcaaattgggaacacattttgcaagctcccaggtggacgc
ctaaagccaggagaaaatgaaatcgagggtttgaaaaggaaactctccagcaaacttgct
gctaatcctcctgccaatcagccaaattggaagataggtgagtgtgtggccacctggtgg
aggccgaactttgaaaccataatgtatccatactgtcctccacacataacaaaacctaag
gagtgtaagaagctctaccttgttcacttatctgaaagagagtactttgctgtccccaaa
aatctaaaacttcttgctgtgccattgtttgagctttatgacaatgttcagagatatgga
cctgtaatatctacaattcctcaacagctttccagattgcagttcaacatgatccatcaa
tag
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