Solanum stenotomum: 125871595
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Entry
125871595 CDS
T08385
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
sstn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125871595
03460 Fanconi anemia pathway
125871595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125871595
03036 Chromosome and associated proteins [BR:
sstn03036
]
125871595
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125871595
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125871595
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
125871595
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
125871595
FA (Fanconi anemia) pathway
Downstream FA components
125871595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
125871595
NCBI-ProteinID:
XP_049408184
LinkDB
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Position
7:23342774..23351997
Genome browser
AA seq
1126 aa
AA seq
DB search
MSTWQLYSVSVNDFRWKVSDGESLTEPSLTLAPQQLQSMPDLLRHGSSRLAGNTDSTSTQ
FPIFRTGSGKPVSVKHSSISAALSILGDEDKPILDTGIGTGRQDVQEAVFQKGSGKALNA
PQSFSLSSLNKQFSMSNSLFQTASGKPVNISSTGLNRAKALLGLEQNGDHETFPGSGKKN
TTSDELFGFRNSFPILEVEGVASTGSTNVSAASLSPFDVKFNSSVCPAEELVADFMHCAD
KPPPIKFHTAGGRSITVSCEALKRARSLLGDLELGCLVNEKDVADPLLSFSKDQKSVDQV
STKELNSDTPVSLLLAAKGCGSSSIFTSPLRSTLYHKKSSIKTENLVPASNLIKEFDAVA
KERTSRLDHSIPQNGEPFNKNSAATNLRENDNPSKPKLLERPSRGPLVDISNSIGGGFAD
RNQNVGRKRKPGGSFVSPFKKPRSTSIVNSLKRNDSGAANGFSDLAPKSPSQKGKVSVRY
PFHVARLYMKEYLGKPPSILSKLESLPDDVRRMNPVTAETYVLNDKSCSGCIGVESFLEM
LSHSGASMQYVSKKWITNHYKWIVWKLASYERCYSGKFSGKLLTICNVLEELKYRYEREV
NHGHRSAVKRILEGDVPPSSMMVLCVSNIYSICVSPVGPQSSLSSTTENGTCAKVELTDG
WYSIIAVLDIQLSKKLAAGKLFVGQKLRIWGAGLCGWTGPVSPLEVSGTTSLLLHINGTY
RAHWASRLGFCKGGGIPLSFMSIKDGGGAVPLTLVVISRIYPVLFRERLSNRGFVVRSER
MEDKEMQYFTERRSSILEGVVSESQREKRDAYIGSDYESKEGARILRILERAAEPELLMA
EMTSEQLNLFSSYQAKLEAFRQSDLQKSLEKALETAGLAERDVTPFMRVRVVGLTSKRTP
LKCCPKEGLVTIWNPTEKQHCGLAEGQAFSVTGLTPISSDSSTLYLQTKGSTSKWLPLSP
LAVEHFESSFCPRQSISLSKLGEVPISREFDIAAVVVFVGQLYTEAHQAKQWVFVADGSK
AMLDSDDELETLMAISFTSPCIDSFAPINSNLVESTVCFCNVIKRARDNVNNLWVAEATE
NSTYYLKYDHSDCSHLKDAGASAERWAKISGLRLEKLRGRVKSIIS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttgtactccgtctcggtgaatgatttccgatggaaagtctcggat
ggagagtctcttactgaaccgagcttaaccctagctccccagcagctccaatccatgccc
gatctcttgcgtcacggaagttcgagattagcagggaacactgattcaacttctacacaa
tttccaatttttcgaactggatcagggaaacctgtgtcagtgaaacattcttccatatca
gcagctctttccatccttggtgatgaagacaagccgattttggacacaggcataggaact
ggaagacaagatgttcaggaagccgtgttccagaaaggctcagggaaagcccttaatgct
ccacaatccttttccctttctagcttgaacaaacaatttagcatgtccaactcgttgttc
cagacagcctccggtaaaccagtcaatatatcttctacaggtcttaatagggccaaggcg
ttgttgggcttggaacaaaatggtgaccatgaaacatttccaggttctggaaagaaaaat
acaacgtcagatgagctctttggttttcggaattcatttcctattctggaagtagagggc
gttgctagcacagggtctactaatgtttcagcagcttcattgtctccgtttgatgttaaa
tttaactcctcagtttgtccagcagaggagttagtagcagattttatgcattgtgcagat
aaacctcctccaataaagtttcatactgctggtggtagatcaataacagtttcctgtgag
gcattgaaacgcgcaaggagtctgcttggagatctagagctgggttgtcttgttaatgaa
aaggatgtggctgatccattgctttctttttcaaaagaccaaaaatctgttgatcaggtc
tccaccaaagaattgaactctgatactcctgtttccctcttattggcagcgaaaggttgt
gggtcctcaagcatttttacatcgccactgagatcaactttgtatcataagaagtcttcg
attaaaacagagaatctcgttccagcaagtaacttgataaaggaatttgatgctgtggca
aaagaacgcactagtaggctggaccatagtattccacagaatggagagcctttcaataag
aactcagcagctacgaaccttagagaaaatgacaacccttcaaaacctaaattgctagaa
cggccttccaggggccctttggtggatatctcaaatagtattggaggaggatttgcagat
agaaaccagaacgttggtcggaagaggaaacccgggggaagttttgtttctccattcaag
aagcctcgaagcaccagcatcgtcaactctctcaaaagaaacgattccggtgctgctaat
gggttctcagatttagcaccaaaatcaccctctcaaaaaggaaaggtttcagttcgatat
ccattccatgtggcacgattgtatatgaaggagtatcttggaaagcccccatcaatcctg
agcaagctagagagtttgccagatgacgtgagaaggatgaatccagttactgctgagact
tatgtgctcaatgataaatcttgctcaggttgcattggagtagagtcttttttggagatg
ctgtctcattcaggagcttccatgcaatatgtttctaaaaagtggattacaaatcactat
aagtggattgtttggaaacttgcatcttatgagaggtgttacagtggcaaattttctggg
aaacttctgacaatatgcaatgtacttgaagaattaaaatacagatatgaaagagaagta
aatcatggtcatcgatctgcagttaagagaattttagaaggagacgtcccaccttcttct
atgatggtactctgtgtttccaatatctattcaatttgtgtctcgccagttggacctcaa
tcttcactatctagcacgaccgagaatggaacttgtgcaaaagttgaactgaccgatggg
tggtattcaataattgctgtcttagatatacaactatccaagaagttggctgctggaaag
ctgtttgttggtcaaaagcttaggatctggggagctggattgtgtggctggacaggtcct
gtttcacctcttgaggtgtcagggacgactagtttactgctgcatataaatgggacatat
agagctcattgggcatctcgtttgggcttctgtaaaggtggtggtattccattatcattt
atgtcaatcaaggatggtggaggtgctgttccactaacattggttgtaatttcaaggata
tatcctgttctcttcagggaaaggttaagtaatcgggggttcgttgtaagatctgaacgg
atggaagataaagagatgcagtattttactgaaagacgtagtagcattttggagggagta
gtctcagaatctcaaagagaaaagagagatgcatacatcggaagcgactatgaaagtaaa
gaaggggcaaggattttaaggatactcgagagagctgcagaaccagaacttctgatggca
gagatgacttcagagcagttgaatttattttcatcctatcaagcgaagttggaggcattc
aggcagtctgacctgcaaaaatctcttgaaaaagctttggaaactgctggacttgctgaa
agagacgtcactccgtttatgcgagttagagttgttggattgactagcaaacgtacacca
ttgaagtgctgtccaaaggaaggcttagttacaatatggaatcctactgagaaacagcac
tgtgggcttgcagagggtcaagctttttctgttacagggcttacaccgataagctcagac
tctagcaccctttacttgcaaacaaaagggtccacatccaaatggctgcctttgtctcct
ctggcagttgaacattttgagagctctttctgtcctcgccaatcaatttcattgagtaaa
ttgggtgaagttcctatttccagggagtttgatattgctgcagtggttgtttttgtgggg
cagctgtatacagaagctcatcaagcaaagcagtgggtatttgtggctgatggatccaaa
gctatgttggattctgatgacgaattagaaaccttgatggccatcagtttcacctcacca
tgcatagattcatttgctccaataaactccaaccttgtagaatctacggtttgtttttgc
aatgtcatcaagagagcaagagataatgttaataacctctgggtagctgaagcaaccgaa
aattcaacgtactatttaaaatatgatcattcagattgttctcatctaaaagacgcgggt
gcttctgctgaaagatgggcaaagatatctggcttgagacttgaaaagcttaggggaaga
gtgaaatcaataattagctga
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