Solanum stenotomum: 125872047
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Entry
125872047 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125872047
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125872047
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
125872047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
125872047
NCBI-ProteinID:
XP_049408663
LinkDB
All DBs
Position
8:complement(7772134..7805337)
Genome browser
AA seq
2088 aa
AA seq
DB search
MLFQLPRLTNALREPFDADQAYLHRKTILQNLKSRSTATSLEESELARKIVYKWDEASPE
LRQAYKQFIGAVVELMKGEIVSEEFREVAFSVYRLFSGPMVEGEEHRRIAEKKLDLQKLV
GYVVSDSLLSRVASLAQGLYELQNNHPGIETVSLPEVSNGITDEVEFGSDLVFRPPARFL
IDVSLEDSDFLVEQDSAPSSSHETQNEHGSFSNFRESVSGGKFDLSWLSNACDEIVRGST
SQLPRDELAMAICRVLDSEKPGDEIAGDLLDLVGDGAFETVQHLIMHKKEIVDAIHHGLI
ELKADKMTTGGQSRAPSYAVQVTVQTESEKQIDKLRRKEERKHRRGTNNGVEGDLSTVSF
SSLLHASEKKYIFEDLVGHGEGTNTLGPTALPQGTIRKHYKGYEEVIIPPTPTASMKPGE
RLIEIKELDDFAQTAFHGYKSLNRIQSRIYHTTYNSNENILVCAPTGAGKTNIAMIAILH
EIKHHFRDGYLHKDEFKIIYVAPMKALAAEVTSTFSHRLSPLNVTVRELTGDMQLSKNEL
EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE
STQSMIRIVGLSATLPNYLEVAQFLRVNSETGLFFFDSSYRPVPLAQQYIGISEHNFLAR
NELLNEICYNKVVDSLKQGHQAMVFVHSRKDTVKTADKLVELSGKGTESELFKNDEHPQY
EILKREVFKSRNKEVVQLFEHGIGIHHAGMLRADRNLTERLFSQGLLKVLVCTATLAWGV
NLPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY
LRLLTSQLPIESQFINSLKDNLNAEVVLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIG
WDEVMADPSLSLKQRDLISDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYTSVE
TYNEMLSRHMNESELINMVAHSSEFENIVVRDEEQNELEMLARTYCPLEVKGGPSNKHGK
VSILIQLYISRGSIDTFSLISDAAYISASLARIMRALFEICLRRGWCEMSSLMLDYCKAV
DRKIWPHQHPLRQFDKDISSEILRKLEEREADLDHLHEMQEKDIGVLIRYGPGGKVVKQC
LGYFPSVLLTATVSPITRTVLKVDLVIAPQFVWKDRIHGTALRWWILVEDSENDHIYHSE
LFTLTKKMARADPQKLSFTVPIFEPHPPQYYIRAVSDSWLQADALYTITFHNLALPETQT
SHTELLDLKPLPVTALGNGTFEALYKFSHFNPIQTQAFHVLYHTDRNILLGAPTGSGKTI
SAELAMLHLFNTQPDMKVIYIAPLKAIVRERMTDWRKRLVSQLGKKMVEMTGDYTPDLMA
LLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYIS
SQTERPVRFVGLSTALANAHNLADWLGVDETGLFNFKPSVRPVPLEVHIQGYPGKFYCPR
MNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFISMPEDSLQ
MVLSQVTDQNLKHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA
HLVVIKGTEFYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFL
YEPFPVESSLREQLHDHINAEIVTGTISHKEDAVHYLTWTYLFRRLMVNPAYYGLEHAEP
GILNSYLSSLVQSTFEDLEDSGCIKVTEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGSD
TSLEVFLQILSGASEYDELPVRHNEENYNEKLAEKVPYAVDHNRLDDPHVKANLLFQAHF
SQSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRD
SPLWMLPCMTDDLLNSLHKKGIASIQQLLDCPSESLRAITGSSAASKLYQDMRHFPRIQV
RLKIQPKESNGGKIFTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSTSELYA
LKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLA
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttcaacttcctcgcctgaccaatgctctccgggaaccatttgacgccgatcaa
gcttaccttcaccggaaaaccattctgcaaaatctcaagtctcgcagtactgcaacttca
cttgaagaatcagaacttgctcgaaagattgtgtataaatgggacgaagcttctcctgag
ttgcggcaagcctataagcagtttattggcgcggtggttgagttgatgaagggcgagatt
gtgtcagaggagtttagggaggtggcattcagtgtgtataggcttttcagtgggccaatg
gtggagggtgaggaacacaggcgtattgctgagaagaagctagatttgcaaaaacttgtt
ggctacgtagtttcagactcattactatcaagagttgcctctttagcacaaggattgtat
gagttgcagaataatcaccctggaattgagactgtctctttaccagaagtgtctaatgga
atcactgatgaagtggaatttggctcggaccttgtgttcagaccgccagctcgtttttta
attgatgtttccttggaagattctgattttcttgttgagcaggatagtgcaccttcttca
agtcatgaaacacagaatgaacatggctccttctcaaattttagagaatctgtatctggt
ggaaaatttgatttaagctggttaagcaatgcctgtgatgagatagttagaggaagtact
tcgcagcttcctcgagatgaactggcaatggccatatgccgcgtacttgattcagagaaa
ccaggggatgagatagctggcgatttgcttgaccttgttggtgatggtgcatttgaaaca
gttcagcatcttatcatgcacaaaaaggaaattgttgatgcaatccatcatggactaatt
gaactgaaagctgacaagatgactacaggcgggcaatcgcgcgctcctagttatgccgtc
caggtaactgttcaaaccgagtctgaaaagcaaattgataaacttcgtcgcaaggaagaa
aggaagcataggcgaggaacaaataatggggttgagggtgatttgtccaccgtgagtttt
agttctttgcttcatgctagtgagaagaaatatatatttgaggacctcgttggtcatggt
gaagggacaaacaccttaggtcctacagcccttcctcaaggaactatcagaaaacactac
aaaggatatgaagaagtcattatccctccaacaccaactgcatctatgaaacctggggag
agactgattgagattaaggagctagacgactttgcgcaaacagcttttcatggctacaag
agtcttaaccgtattcagagcagaatttaccatactacgtacaatagcaacgaaaacata
ctagtgtgtgcccccactggggctgggaaaacaaacatagctatgattgctattctacat
gagatcaaacatcactttagagatggttacttgcataaggatgaattcaagataatctat
gttgcccctatgaaggcattagctgcagaggtcacatcaactttcagtcaccgattgtct
ccacttaatgtaactgtgagggaacttactggagacatgcagctttctaagaatgagctt
gaggaaacacagatgatagtgacaacacctgaaaagtgggatgttattactcgtaaaagc
agtgacatgtcgctctcaatgctggtgaagctacttatcattgatgaagtccatttgcta
aatgatgacagaggccctgtgatagaagcattagtagcccgtacacttcgtcaggtggag
tccacacagtctatgataaggatagtgggcctttcagccacattacccaactatttggag
gttgcacagttcctaagggtgaattcagagacaggcttatttttcttcgattcgagctac
cgtccagtacctcttgcacagcagtatattggtattagtgagcataactttttagcccgc
aatgaactgcttaatgagatatgctacaataaggttgttgattccttaaaacaagggcac
caggctatggtttttgtccattcacgtaaagacacagtgaaaactgctgataagctggtt
gaattgtctggtaaaggtacagagtctgagctgttcaaaaatgacgagcatcctcaatat
gagattttaaagagggaagttttcaagtccagaaataaggaggtcgttcaactgttcgaa
catgggattggcattcatcatgctggaatgttacgtgctgacagaaacctaacagagaga
cttttctctcagggacttttgaaggtccttgtttgcacagcaactttggcatggggagtc
aatttgcctgctcacacagttgtgattaagggaactcaaatatatgatccaaaggctggt
ggatggcgagatctgggtatgctagatgttatgcaaatcttcggacgtgctggaagacct
cagtttgataaaagtggtgaaggcattataatcacttcacatgacaagttggcttattat
ttacggctattgacaagtcaacttcctatagaaagtcagtttatcaattccttgaaagat
aatctaaatgctgaggtggtactgggtactgtaacaaatgtcaaggaagcttgtgcttgg
cttggttacacatatcttttcattaggatgaagatgaatcctttggcctatggcatcgga
tgggatgaggtcatggcagatccatcattaagcttaaagcaaagggatcttataagtgat
gctgctcgtgcacttgacaaagcaaaaatgatgcgttttgatgagaaaagtgggaacttc
tactgcactgagcttggtcgtattgcaagccacttttatatccagtatactagtgttgaa
acttacaatgaaatgctgtcacggcatatgaatgaaagcgagttgataaatatggtagct
cattcatctgaattcgaaaatattgttgtccgagacgaggaacaaaatgagcttgagatg
ttggctcgcacatattgtccattggaagtcaagggtggtccatctaacaaacatggaaaa
gtttcaattcttattcagctgtacatctctcgaggatcaattgacacgttttcgctgatc
tctgatgctgcttatataagtgcaagcttggcacgtattatgcgagctctttttgagatt
tgtctgcgtagagggtggtgtgagatgtcttctctaatgttagactattgcaaggctgtg
gatcgcaaaatatggccccatcaacatcctcttagacagtttgataaggacatttcttca
gaaatattgaggaaacttgaagaaagggaggcagatttggatcatttacacgagatgcaa
gagaaagatattggagttttgattcgttatggacctggaggaaaggttgttaagcaatgt
ctcggatatttcccatcagtcctgttgactgctacagtcagtccaatcactagaacggtt
ctgaaggtggatttggttatagctccacagtttgtttggaaggatcgaattcatggcact
gcgttgcgctggtggattctggttgaggattctgagaatgaccacatttaccattctgag
ctcttcaccctcacaaagaagatggctagagcggatccacagaaactgtcctttacagtg
ccaatctttgagccacatcctccccagtactacattcgtgctgtttctgactcgtggcta
caagcagacgctttgtacacaataactttccacaaccttgctcttccagagacccaaaca
tcccacactgagcttctagatttgaaaccccttcctgtgactgcactcggcaatggaact
tttgaggccttgtataaattttcacacttcaatcctatacaaacacaggcttttcatgtg
ctgtatcacacggacagaaatatccttttaggagctccgactggaagtgggaagacaata
tcagctgagcttgctatgctccatttattcaatacacagcccgatatgaaggttatctat
atagcacctttaaaggctattgttcgggagagaatgacggactggagaaagcgtcttgtt
tcccaacttggaaagaagatggttgaaatgactggtgactacacgccggatctaatggct
ctcttgtcagcagacatcataatctccactcccgaaaagtgggatggtatcagtcgcaat
tggcacagtcgaagctatgtcactaaggttgggcttatgattttggatgagattcattta
cttggagctgatcgaggacccatacttgaggttattgtctcaaggatgagatatatatct
tctcaaacagagcggccagttcggtttgttggcctgtcaacagcattagcaaatgcacat
aatttggctgattggttgggtgtcgatgaaactggcctcttcaatttcaagccaagtgtg
aggcctgttcctcttgaagttcatattcagggatatcctgggaagttttactgcccgagg
atgaatagtatgaacaagcccacatatgctgctatatgtacacattcaccaacaaaacca
gttctaatctttgtctcctctcgtcgccaaacaagacttacagcactggaccttattcag
tttgcggcttcagatgagcacccaaggcagttcataagcatgccagaagattcacttcag
atggttctttctcaagtcacagaccagaacttgaagcacaccttacaatttggaattgga
ttacaccatgccgggctgaatgataaagacagatcattggttgaggaactgtttgcaaac
aacaagatccaggtgttggtttgtacaagtacgttagcatggggtgtaaaccttcctgca
catttggttgttataaagggaacagagttttatgatgggaaggcaaaaagatatgttgat
ttcccaatcactgatatattacaaatgatgggtcgagctggtcgtccacaatatgatcaa
cacgggaaagctgttattcttgttcatgaacccaaaaagagcttttataaaaagtttcta
tatgaaccattcccagttgaaagtagcctgagagagcaactgcatgaccacatcaacgct
gagattgttactggaacaatatctcataaagaggatgctgtgcattatctcacttggact
tacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacct
gggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatctagaagac
agtggatgcatcaaggttactgaagacagtgttgaaccactgatgttgggctcaatagca
tctcagtattatttgaagtacaccactgtatcaatgtttggctcaaaaataggatctgat
acatcacttgaggttttccttcaaatactgtctggtgcttctgaatacgatgagctcccg
gtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtc
gaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttt
tcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaa
agtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagt
accattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagggac
tctcctctttggatgttaccatgcatgactgatgatctactgaactcattgcataaaaaa
ggaattgctagtatccagcagctgttggattgcccttcagaatcactgcgggctatcact
gggagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagtt
cgacttaaaattcagccaaaggaatctaatggtggaaagattttcaccttgaacattaga
ttggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaag
gtaaaagatgaagcttggtggttagtcctttgtaatacttccacaagtgaactgtatgct
ctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctg
accaatttccaggggataaagctcattctagtatcggattcttatattgggtttgaacaa
gaacactctattgaaggattggcttaa
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integrated database retrieval system
