KEGG   Solanum stenotomum: 125872104
Entry
125872104         CDS       T08385                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
sstn  Solanum stenotomum
Pathway
sstn03030  DNA replication
sstn03410  Base excision repair
sstn03420  Nucleotide excision repair
sstn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125872104
   03410 Base excision repair
    125872104
   03420 Nucleotide excision repair
    125872104
   03430 Mismatch repair
    125872104
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sstn03032]
    125872104
   03036 Chromosome and associated proteins [BR:sstn03036]
    125872104
   03400 DNA repair and recombination proteins [BR:sstn03400]
    125872104
DNA replication proteins [BR:sstn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125872104
  DNA Replication Termination Factors
   ELG1-RFC complex
    125872104
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125872104
DNA repair and recombination proteins [BR:sstn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125872104
  Check point factors
   HRAD17(Rad24)-RFC complex
    125872104
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_22 AAA_assoc_2 AAA_11 DUF815 AAA_5 ATPase_2 AAA_14 DNAX_ATPase_lid AAA_30 AAA_24 RuvB_N AAA_7 ResIII AAA_3 AAA_19 bpMoxR nSTAND3 AAA_28 IstB_IS21 AAA_2 AAA_18 SLFN-g3_helicase RNA_helicase Mg_chelatase ABC_tran AAA_25 TniB DO-GTPase1 TIP49
Other DBs
NCBI-GeneID: 125872104
NCBI-ProteinID: XP_049408735
LinkDB
Position
8:19330354..19339697
AA seq 357 aa
MAETISLMDIDDDKIDTKPNKGKNIVSNTEPRSVPWVEKFRPQSLSDVAAHRDIVETIDR
LASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQMHNMVLELNASDDRGIDVVRQQIQD
FASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNVNKVIPA
LQSRCTRFRFAPLDAVHVSERLKHVVEAEQLDVPEGGLKALVRLSNGDMRKALNILQSTH
MASQQISEDAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISEIKTRKGLALVDIVREV
TMFVFKIKMPANVRVQLINEMADIEYRLTFGCNDKLQLGSLISAFTRARSALVAAAK
NT seq 1074 nt   +upstreamnt  +downstreamnt
atggcggagacaatctcgttaatggatattgacgacgacaaaattgacacaaaaccaaac
aagggcaaaaacattgtctccaatactgaaccgagatcagtcccttgggtcgaaaagttt
cgtcctcagtctttatcagacgttgctgctcatcgcgatattgttgaaacaattgatagg
cttgcgagtagtaatcggttgccgcatttgctgctttatggacctcctggaactggaaag
acatctacaattcttgctcttgcacggaagctatatggttctcagatgcacaatatggtt
ttagagctgaatgcctctgatgatcgtgggattgatgtggtgcgccagcagattcaagac
tttgctagtactcagagcatctcatttggtgcaaagtcagcggtgaagttagtactattg
gatgaagcagatgcaatgacaaaggatgcacagtttgctctgcgtcgagtgattgagaaa
tatacaagaaacactaggtttgccttgatatgtaacaatgtcaacaaggtcattcctgcc
ttacaatcacgatgtacacgatttaggtttgctccacttgatgcagttcatgtctcggag
cggttgaaacatgttgttgaggctgaacagcttgatgtccctgagggtggtttaaaggca
cttgtacgattgagcaatggtgacatgcgaaaagctttaaacattttgcagtcaacacac
atggcttctcagcagatttcagaagatgccgtctatctgtgcactggaaacccattgccc
aaggacattgagcagatttcttactggcttctgaatgaaccctttgctatcagttgcaaa
cgaatatcagaaatcaagacacgaaaagggttggctctggtggatattgtgagagaagta
accatgtttgtcttcaagattaagatgccggcaaatgttcgagttcagctgatcaatgag
atggctgatattgagtataggttgacttttggttgcaatgataagttgcagcttggatca
ctgatttctgcttttacacgagcaagatctgcacttgttgcagctgcaaagtaa

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