Solanum stenotomum: 125872477
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Entry
125872477 CDS
T08385
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125872477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125872477
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125872477
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
125872477
NCBI-ProteinID:
XP_049409167
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Position
8:35346076..35353021
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AA seq
829 aa
AA seq
DB search
MAEKEKSSRDYRDKHRSSKDKHYEDDHRHHHHRSKHRSEDGHHRSEREGSRERSHYHDRK
EEALEKKHSHKRKDRAESVDRSNADDKRPRVSDKRRTEDDNGRDKRRVDDGDWRDKDEER
REKRRFEDKAKEEEEDVEVDEERRGGGFQMTTSKKEPTDNVQDQAVGSIAKGETMGSYNV
TSRTLPGNNLAHGDSPATKVSLLSTTNENKGVNINGSHQIPGKSSTDGTVSGAGKSGSLS
LDALAKAKRALQMQKELTQKYKKIPALNKNKGPNFTREGLPQVGPKESLQPSANAGIFPT
PVASSDAGVLLPPGSAPSASNPPSSGLPHLMGLTAQKYEAVKRAQELAAKMGFRQDPEFA
PLINMFPGQMPPEVTLQPKPAKAPVLRLDALGREIDEQGNIVNMLKPSSTLKVNINKKKQ
EAFQILKPELEVDPEKNPHYDPGMGIDKNKILRPKRMTFQFVEEGKWSRDAEIIKLKSQF
GEARAKELKAKQAQLTKAKAEPDINPNLIEVSERVIAKEKQKEPIPDVEWWDAPLLRSGT
YGDVVDGNVTNEQLKIERITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLA
REKERQEMIRQGLVEPPKPKVKMSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHVDRN
IARKLTPDERREKKERKLFDDSNIAPETIVSVYKINDLSHPQTRFKVDVNAQENRLTGCA
VISGGISVVVVEGGKKSIKRYGKLMLRRIDWAAAGKKEDDEGEGEGEGEDEDKPLNKCVL
VWQGSVAKSSFHRFFVYDCRTEAAARKVFADAGVPHYWDLAVNFKDDEF
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaagagaaatcgagtagggattacagagacaaacaccgtagttccaaggat
aagcactatgaagatgaccaccgtcatcatcaccatcgttccaagcatcgatcagaagac
ggacatcaccgatctgagagagagggaagccgagaaagatctcattaccatgataggaag
gaggaagcactggagaaaaagcattcccataagaggaaagaccgagcagaaagtgttgat
agaagcaatgcggatgacaagagacctagagtttctgacaagaggaggaccgaggacgac
aatggtagggataaacggagagttgatgatggagattggagggataaggatgaggagaga
agagagaaacggaggtttgaggataaagcaaaggaggaggaggaggatgtggaagttgat
gaagaaaggaggggaggtggatttcaaatgacaacttctaagaaagagccaactgataat
gtccaggatcaggctgttggttccattgctaagggtgagacaatgggatcatacaatgtg
acatcaaggactttgcctggtaacaacttggctcatggtgattctccagctaccaaggta
tctttgctttctaccacaaatgaaaataagggagttaatattaacggatctcatcagatt
cctgggaaatctagtacagatgggacagtttctggtgctggcaagagtgggagcttatcc
cttgatgctttagcaaaagcgaagagagctttacaaatgcaaaaggagttgactcaaaag
tacaagaagatacctgcattaaacaagaacaagggtcccaactttacaagagagggactt
ccacaggtgggacccaaggagagccttcaaccttcggctaatgcagggatttttcctact
ccagttgcatcttcagatgcaggggtattgctacctcctggttcagcaccaagtgcatcc
aatccaccatctagtggtttgcctcatcttatggggctcacagctcaaaaatatgaagca
gtaaagcgtgcacaggaacttgctgctaagatgggattccgacaggacccagaatttgct
cccctcataaacatgtttccggggcaaatgccaccagaggttacccttcagccaaagcct
gcaaaggcccctgttcttcgattggatgcccttggtagggaaatcgatgagcagggaaat
attgtcaatatgcttaagccatcgagcactcttaaggtgaacatcaataaaaagaaacaa
gaagcatttcaaattctcaaacctgaacttgaggttgatcctgagaaaaatcctcattat
gatccaggcatgggaattgacaagaacaaaattttgaggcccaagaggatgacatttcag
tttgtggaggaaggcaaatggtccagagatgcagagataatcaagttaaagagccaattt
ggtgaagcacgagctaaagagctaaaggcaaagcaagcacagttgaccaaggctaaagca
gagcctgacataaatccgaatctcattgaggtatcggaaagggttattgccaaggaaaaa
cagaaggaacctattcctgatgttgagtggtgggatgctcctctgttacgatctggtact
tatggtgatgttgttgatggtaacgtaactaacgaacagttgaagattgaaaggatcacc
atatatgttgaacatcctcgccctattgagccacctgctgaaccagctccacctcctccc
caaccattgaaactaaccaaaaaggagcaaaagaaacttcgaactcagcgaagattggcc
agagagaaagaaagacaagaaatgatacgacaaggcctggtggaaccaccaaagccgaaa
gttaaaatgagcaatctaatgaaagttcttggctcagaagccacacaggatcctacaaag
cttgaaatggagatcagaagtgctgctgctgagcgtgagcaggctcatgtagacaggaat
attgctcgtaagcttactcctgatgagcgtcgagagaagaaagagaggaaactttttgat
gactcaaatatcgcaccggagactattgtttcagtatacaaaattaatgacctctcccac
ccacaaacccgcttcaaggtggatgttaacgctcaggagaatcgtttgactgggtgtgcg
gtgatctcaggaggtattagtgttgttgttgttgaaggtgggaaaaaatcaatcaagcga
tatgggaaacttatgcttagaagaattgattgggcagctgctggtaagaaagaagatgat
gaaggtgaaggtgaaggtgaaggtgaagatgaagataagcctctcaacaagtgtgtgttg
gtctggcaagggagtgttgctaaatcaagcttccataggttttttgtttatgactgcagg
actgaggctgctgctcgtaaagtttttgctgatgctggggttccccattactgggatctt
gctgttaactttaaagatgacgaattttaa
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