Solanum stenotomum: 125872494
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Entry
125872494 CDS
T08385
Name
(RefSeq) oligouridylate-binding protein 1B-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125872494
03041 Spliceosome [BR:
sstn03041
]
125872494
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125872494
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125872494
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_5
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
125872494
NCBI-ProteinID:
XP_049409187
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Position
8:10719768..10725241
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AA seq
417 aa
AA seq
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MQNQRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVFVGN
IHPQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAIVSLNGRHLFGQP
IKVNWAFASGQREDTSSHFNIFVGDLSPEVTDAMLFACFSVYPGCSDARVMWDQKTGRSR
GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDDKQSSDAKSVVELTNGS
SEDGKEAANSDAPENNPQYTTVYVGNIAPEVTQLDLHRYFHSLGAGVIEEIRIQRDKGFG
FVRYNTHAEAALAIQMGNTHSVLGGRQIKCSWGNKPTPPGTSSNPLPPPAPTPLGISATD
LLAYERQLAMSKMGGVPGLMGQYPLKQASMGMASGASQAIYDGGFQNVAAQQLMYYQ
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcagaggctgaagcaacaacagcagcaagctttgatgcaacaagcgcttctt
cagcaacagtctctctatcatcctggcctcttagctccacctcagattgagccaatacct
agtggaaatctgcctcctgggtttgatccaagcacatgccgcagtgtgtttgttgggaat
atccacccacaagtgactgaacctcttcttcaggaagttttctctagtactggtcttgtg
gaaggatgtaaactgataaggaaggaaaagtcatcttatggtttcatccactactatgat
cgtagatcagctgcacttgctatagtctctcttaatggaaggcatctgtttgggcagcct
attaaagttaattgggcatttgccagtggacagagggaggacacttcaagccactttaat
atatttgttggtgatctgagccccgaagttactgatgcaatgctatttgcttgcttctct
gtttaccctggttgctctgatgcaagggtaatgtgggatcaaaagactgggcgttctagg
ggttttggttttgtttctttccgaaaccaacaggatgctcaaagtgccatcaatgattta
acaggcaaatggcttggtagtaggcagatacgttgcaactgggctaccaaaggtgctaac
tcgaatgatgacaaacagagttctgatgccaaaagtgttgtggaattaacaaatggttca
tcagaagatggtaaagaggcagcgaatagtgatgctcctgaaaataacccacaatacacc
actgtttatgtgggcaatattgctcctgaggtaacacagctcgatctccatcgctacttt
cattcccttggtgcaggagtgattgaggaaattcgaattcagcgagataaaggatttggc
tttgtaagatacaatactcatgctgaggcagctttagcaattcaaatgggaaatacccac
tcagttctgggtggaaggcagattaagtgttcgtggggtaacaagccaactccgcctgga
acaagctcaaacccacttcctccgccagctcccacaccattaggtatttcagccactgac
cttttggcttatgagagacagctagctatgagcaagatgggtggtgtcccgggcctcatg
ggtcaatatcctttgaagcaagcatcaatggggatggcctctggagcaagccaagctata
tatgatggcggtttccagaatgttgctgcacaacagctcatgtattatcagtga
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