Solanum stenotomum: 125872503
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Entry
125872503 CDS
T08385
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125872503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125872503
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125872503
mRNA degradation factors
5'-3' decay
Lsm complex
125872503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
125872503
NCBI-ProteinID:
XP_049409198
LinkDB
All DBs
Position
8:10683267..10687391
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AA seq
128 aa
AA seq
DB search
MSWASPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGEI
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatttatctctctacttctcttgctagctatcttgat
aagaaacttctagtgttgctgcgagatgggcggaagcttttggggacgcttcgttctttt
gaccaatttgctaatgctgttctagaaggtgcgtgtgagcgtgttattgttggtgaaatc
tactgtgatattccattaggtctttatattatacgaggggaaaatgtcgtgttaattggc
gagttggatgtagataaggaggaacttccaccccacatgactcgtgtcccagaagctgag
ataagaagggcccaaaaagcagaaagggaggctacagatcttaaaggtacaatgagaaag
aggatggaattccttgatatggattga
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