Solanum stenotomum: 125872553
Help
Entry
125872553 CDS
T08385
Name
(RefSeq) RNA polymerase sigma factor sigA-like isoform X1
KO
K03086
RNA polymerase primary sigma factor
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125872553
Transcription machinery [BR:
sstn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
125872553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
125872553
NCBI-ProteinID:
XP_049409245
LinkDB
All DBs
Position
8:complement(5767775..5782949)
Genome browser
AA seq
505 aa
AA seq
DB search
MAIAAVIGLYAGNRILSSSFYYSDLTEKLACSGDHAMICNPTRNVINAKKSSNYSAGYVS
NRKKQSVKAVKEHVNIASNHSDVEPMVEMFKKLQNESFSEEDSVEVLLLLQKSMLEKQWN
LSAEKTLAAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKTSATANTASKRLRSV
VGPELQQNRLKGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQ
LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL
RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDN
GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN
NPWHGVDGWALKDEVNNLISSTLRERERDIVRLYYGLDNECLTWEDISRRIGLSRERVRQ
VGLVALEKLKHAARKKQLDAMLVKH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttt
tattattctgatcttactgaaaagttagcttgtagtggtgatcatgctatgatctgcaat
cctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttcc
aatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaatattgcatctaatcat
tctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagcttcagtgaa
gaagattcagtggaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaat
ctttcagctgagaaaacattggcagcttttccaccaaatgaaaagaactgtaaaaagaag
atgcagatcacttgttcagggacttctgctaggcggaggagaatggatactcgtaaaaga
gttcaaattccaaaaacttcagccacagcgaatactgcaagcaagcgactgagatctgtt
gtcggtccagagctacaacaaaaccgtttgaaaggttacatgaatggtgtcgtaaaccaa
gagctgcttacacataaggaagtggtgcaactatccaaaaaaatcaaatttggtctttat
ttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgatgatcaa
ctcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttcc
ttggccagagaaaaacttgcaatgagcaatgttcgtctcgtcatgtcaattgcacaaaga
tatgatagcatgggtactgaaatggctgacctcattcaggggggccttattggactactt
cgcgggatagagaaatttgaccactcaagaggattcaaaatctcaacttatgtttattgg
tggattcgtcagggcgtctcccgagcattagttgataactcgagaaccttaagattgccc
atacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagataat
ggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtc
aggaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctct
ttaaatggccttcctggagcaacacttcatagctacattgctgataatcgcttggagaac
aacccgtggcatggagttgatggatgggcgctcaaggatgaagtaaacaacctcatttct
tcaacgcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgag
tgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcag
gttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgca
atgttggttaaacattga
DBGET
integrated database retrieval system
