Solanum stenotomum: 125872640
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Entry
125872640 CDS
T08385
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
sstn
Solanum stenotomum
Pathway
sstn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125872640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125872640
Membrane trafficking [BR:
sstn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125872640
Hops complex
125872640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
zf-C3H2C3
TPR_Vps41
Beta-prop_EML_2
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
125872640
NCBI-ProteinID:
XP_049409355
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All DBs
Position
8:12566307..12572280
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AA seq
952 aa
AA seq
DB search
MYQWRKFEFFEEKFSGKVPEDIAGKIQCCSSGKGRIVLGCDDGSASLLDRGLKFNYGFQA
HSSSVLFLQQLKQRNFLVTVGEDEQIASQPPAVCLKIFDLDKMEPEGTSTSSPDCIQILR
VFTYQFPEAKITSFLVLEEAPPLLLIVIGLDNGSIYCIQGDIARERIKRFKLQVDNHSDK
GQSSVTGLGFRVDGQVLQLFAVTPNTVNLFNMHTQSPTRQTLDQIGSSVTSVAMTDRSEF
IIGRPEAIYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVFDDQRTGKNTFNVYDLKNRLI
AHSIVVNEVSQMLCEWGNIILILEDKSTLCIGEKDMESKLDMLFKKNLYTIAINLVQSQQ
ADAAATAEVLRKYGDHLYSKQDFDEAMAQYIHTIGHLEPSYVIQKFLDAQRIHNLTNYLE
KLHEKGLASNDHTTLLLNCYTKLKDVEKLNEFIKSEDGVGEQKFDVETAIRVCRAANYHE
HAMSVAKKAGRHEWYLKILLEDLGRYEEALQYISSLELSQAGVTVKEYGKILIEHKPAET
VEILMRLCTEESELPKKGASSGAFISMLPSPIDFLNIFVHYPHALLEFLEKYTSKVKDSS
AQVEIHNTLLELYLSHDLDFPAISQSNIDEGGNDLASSKSVSNGKAISNKKDVNDEKGRQ
ERRRKGQTLLKSAWPSELEQPLYDVDLAIILCEMNDFKEGLLFLYEKMKLFKEVIACYMQ
VHDHEGLIACCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERDDILPPI
VVLQTLAKNPCLSLSVIKDYIARKLEHESQLIEEDRRAMEKYQEESSTMRKEIQDLRTNA
RIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAVLETKRSLEQS
SKNPDQFFQQVKSSKDGFSVIADYFGKGIISKTSNGPSEAIGSNSASSGNDF
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatggaggaagtttgaattttttgaggagaaattttctgggaaagttccagaa
gatatagcgggcaagatccaatgttgttccagcggtaaaggaaggattgtgttgggttgt
gatgacggcagtgcttcgttattggatcggggattgaagttcaattatggttttcaagct
cactcttcatctgtcctcttcctccaacagctcaagcaaaggaacttcttagtgactgtt
ggagaagatgagcaaatagcttcccagcccccagctgtttgccttaaaatttttgatctt
gacaagatggagcccgagggaacaagtacatcaagtccagattgtattcaaatactgcga
gtattcacctaccagttccctgaagcaaagatcacgtcgtttttggtgctggaagaggct
ccgccattattactcatagttatagggctggacaatggttccatctattgcattcaagga
gatatagcccgtgaacgcatcaaacgcttcaagcttcaggtggataatcattcagacaaa
ggtcaatcctccgtcacgggtctggggttcagagtggatggtcaggtgcttcagctgttt
gctgttaccccaaatacagtgaacttgttcaacatgcatactcaatcacctacccggcag
actcttgatcagattggatctagtgtaactagtgttgcaatgactgatcgatcggagttc
attattggtcggcctgaggcgatatatttctatgaagttgatggtcgtggtccttgttgg
gcctttgaaggagagaagaaattccttgggtggtttcgtggatacctgttatgtgttttt
gatgatcaaagaactggaaagaacactttcaatgtttatgatctgaagaaccggttaatt
gcccacagtatagtggttaacgaagtttctcagatgctttgtgaatggggtaacataata
cttattttggaggacaaatcaactttatgcattggggagaaagatatggagagcaaattg
gatatgcttttcaagaagaacctttatacgattgctataaatctcgtccaaagccagcaa
gctgatgctgctgcaactgccgaagtgctgaggaaatatggcgatcacttgtacagtaaa
caagactttgatgaggctatggctcagtatatacacaccattggacatctagaaccttca
tatgtcatacaaaaatttttggatgcacagagaatccacaatctcaccaattacttggaa
aagttgcacgagaaggggcttgcctcaaacgatcataccactcttttactaaattgttac
accaaattaaaagatgttgagaagctgaatgagttcatcaaaagtgaggatggggttggg
gaacaaaagtttgatgttgagactgcaataagggtatgcagagctgccaattatcatgag
catgccatgtctgttgctaagaaagctgggaggcatgaatggtaccttaaaattttgctt
gaagatctaggcaggtatgaagaagctttacaatatatcagcagccttgagttgagtcaa
gctggggtgacagtgaaagagtatggcaaaattcttattgagcataagccagctgaaaca
gttgagatactcatgaggctttgtacagaggaatccgaactgcccaagaagggagcatca
agtggtgcatttatctccatgttgccttctcctattgattttcttaacatttttgtccat
tatcctcatgcacttctggagttccttgaaaaatataccagcaaagtgaaggattcatct
gctcaagtggaaattcataacacactcctggaattgtacttgtcccatgacctggatttc
ccagcaatttcacaatctaacatagatgaaggtggaaatgatctagcatcttcaaaatca
gtatctaatgggaaggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaa
gagcgacgtcggaaggggcagaccttgcttaagagtgcatggccttctgaactagaacaa
ccactatatgacgttgatcttgccataattttatgcgagatgaatgacttcaaagaagga
ttgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcag
gtacatgatcatgaaggtttgattgcatgctgcaagagattgggtgatttgggtaagggg
ggcgacccttctctttgggctgatttgttgaagtattttggtgaacttggagaagactgc
tcaaaagaagtcaaagaaatcctgacatacattgagagggatgatatcttgcctcccatt
gtggttcttcagacacttgccaaaaacccgtgcctctctctctctgttatcaaagattac
atagctcgaaagttagaacatgagtcccagttgattgaagaagaccgtagagctatggaa
aagtatcaggaagaatcatcaacaatgagaaaagagatccaggatctaagaacaaatgct
agaatttttcagcttagcaagtgtactgcttgcacattcacactagaccttcctgctgtc
cacttcatgtgtatgcactcgtttcatcagcgctgccttggcgacaatgagaaagagtgc
cccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagt
tccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgta
attgctgattattttggcaaggggattatcagcaaaacgagcaacgggccttctgaagct
attggatcaaacagtgcttcttccggcaacgatttctag
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