Solanum stenotomum: 125872669
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Entry
125872669 CDS
T08385
Name
(RefSeq) RNA-binding protein Y14A-like
KO
K12876
RNA-binding protein 8A
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125872669
09122 Translation
03013 Nucleocytoplasmic transport
125872669
03015 mRNA surveillance pathway
125872669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125872669
03041 Spliceosome [BR:
sstn03041
]
125872669
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125872669
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125872669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
125872669
NCBI-ProteinID:
XP_049409386
LinkDB
All DBs
Position
8:complement(12922095..12926927)
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AA seq
260 aa
AA seq
DB search
MINIFLFSTRPDPKRLGRSHCPKTLLRQYNHPAFCLDTASIKILYYIQLKEANQNPKFSL
FAAAKMANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRG
FREETAEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAQEDDLHNTFGEFG
EIKNLHLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRR
RNARRRSPRSHRSRSPRRRF
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgataaatattttcttattttcgacccgacccgacccgaaaagattaggaagatcacat
tgccccaaaacccttctccgccagtataatcacccagcattttgcctggacacagcttca
ataaaaatactttattatattcagttgaaagaagcaaatcaaaaccccaaattctctctt
tttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagac
gatctgatggacgaagatgttgacgcttcatcacctagggcaccgatgccaaagctgaaa
tcagccattacaggcggcggcggtggttcttctgcttctaagaaaatcaaaggacgtggt
ttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgattcgattca
cttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtc
actggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggg
gagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgca
cttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaat
gagctgctcactcagactattcatgttgattgggcattcagcaaaggtccttttagaagg
agaaatgctaggaggaggtcaccacgtagtcatcgttctagaagtcccaggaggagattc
tag
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integrated database retrieval system
