Solanum stenotomum: 125872720
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Entry
125872720 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125872720
09122 Translation
03013 Nucleocytoplasmic transport
125872720
03015 mRNA surveillance pathway
125872720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125872720
03041 Spliceosome [BR:
sstn03041
]
125872720
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125872720
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125872720
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125872720
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125872720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
125872720
NCBI-ProteinID:
XP_049409451
LinkDB
All DBs
Position
8:13638643..13645550
Genome browser
AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVPGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHVVVGTPGRVLA
LAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQAIFKMTPHDKQVMMFSATLSKDIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLAECNFPSICIHSGMTQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggaaaacgaagcttacgaggaagaacttctcgactacgaagaagat
gatgagaaggccccagattccgttaatggaaaagtaaacggcgagtctgccaagaagggt
tatgttggaattcacagttctggattcagagactttcttttaaagccagagctactgcgg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaactgctgtt
tttgttctttcgactctgcagcagattgaacctgttcctggtcaggttgctgctttggtc
ttatgtcatacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcact
tatttgcctgatatcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgtcctcatgttgttgttggaactcctggaagagtacttgca
ttggctagagagaaagacctatctctgaagaatgtgaggcattttattctggatgaatgt
gacaagatgcttgattcacttgacatgaggagagatgtgcaggcaatcttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacactcagcaaggatatccgtccagtc
tgcaaaaaatttatgcaagatccaatggagatttatgttgacgatgaggcaaagttgacc
cttcatggacttgtacagcattacatcaaattgagtgaaacggagaaaaaccggaagcta
aatgatctgctggatgccttggacttcaatcaagtagttatatttgtcaagagtgtgaac
agagcagcagagctgaataaattactagcggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagattgactcgctacaaatctttcaaggagggtcataag
agaattcttgtggcaactgatttggttggtaggggcattgacattgaaagggtcaacatt
gttattaactatgacatgccagattctgcagacacttaccttcacagagtgggtagggct
ggtaggtttggaacgaaaggccttgccattacatttgtgtcctctgcatcagattctgaa
gttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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