Solanum stenotomum: 125872780
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Entry
125872780 CDS
T08385
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125872780
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125872780
microRNA pathway
RISC loading complex
125872780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
Cas3-like_C_2
SWI2_SNF2
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
125872780
NCBI-ProteinID:
XP_049409527
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All DBs
Position
8:complement(25681516..25694472)
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AA seq
1402 aa
AA seq
DB search
MEPTDVAVSENQQLSADPLPFARSYQLEALETALKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSPYIAVFLVPTVVLVTQQGDSLMMHTDLKVGKYWGEMGVDYWDAATWQQQVDTH
EVLVMTPAILLSALRHSFIQINMIKVIIFDECHNARGKHPYASIMMEFYHPQLNHQSSQL
PRIFGMTASPIKSKGSSTADSYWQKIRDLENLMNSKVYTCGSESVLAEYIPFSNPKLKIY
KHVDIPCTLFLSLAHDLEQLKEKHDCSISKSNLSFMSAGTARRRLSKLYSAFLFCLSEMG
AWLAFKATEFLSREEVDFFSWGELDVCAQTIVRDFSLGASKIFSARLPSGPHWSIGGDIK
ANVDAGYLSSKVTCLLESLLEYRDQKDLRCIIFVERIITAIVLRSLLNELLPELCGWRTE
YTAGHISVVQSQSRKLQNKIVEEFRKGLVNIIVATSILEEGLDVQSCNLVIRFDPSATVC
SFIQSRGRARMQNSDFLLMVRSGDDSTLTRMHNYMASGEIMRQESLRHASIPCSPLDDEL
YDEPCYKVESTGAIVTLSSSVSLLYLYCSRLPSDGYFKPNPRCVIDKETGTCTLQLPKSC
PLQRIISVQGNSKISKQLACLEACKELHRVGALTDNLVPDIMEEEIINKESECQIHTVEE
SKYFPPELVSHCGNDSEALYYCYLVELQHDFYNDFQLHGIILAVRTRLKFDDEIMAFDLD
VDRRGRLQVQLNYHKVVALTSEEIQWCQRFQSSVFRILLDRDLSKLQDALAAVQSPIGSA
VSDYLLLPSLGTTPEINWKCVNSLLFPSQVLGDKHMDCCSTQGCKRSVSTKTGVVCSCML
ENSLVFTPHNGHIYCITGFLDNLDCNSLLDMRTGEPITYIKYYKKRHGINICFEEEPLLR
GKHICKVHNYLQRCRTQKAKDSTDSSVELPPELCSLIMSPVSISTLNTYSYVPSIMHRIE
SLVMASNLKKMHLDHCTLNIFIPTVKVLEAMTTKKCLETFHLESLETLGDAFLKYAASIQ
LFKTYENHHEGLLTVKKNKIISNDALCRLGCARKIPGFIRNEPFDLKAWLIPGDNSQIHT
FDEEFLTSSDKMYSREKQKFKSKRVADVVEALIGAYLSSGGEVAALSFMKWLGVDIDFVD
APLPMHFPMNAEKLINVRYLESLLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGD
AVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAQSAVKAGLHKHILHASQDLQRQI
LSTVEDFEKLDLLSTFGWEAETTFPKVLGDVIESLGGAIFVDSGFNKDTTFQSIRPLLEP
LVTPQTVKLQPVRELSELCDQKGYIKKKDVVSRENGVAYITVEVEANGVIHKSTCSGRDK
IMAKKVASKNVLKSLKECPSNA
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggagccaactgatgttgcagtctctgaaaaccaacagctctccgctgaccctctgcct
tttgctagaagttatcagttggaagccctagagactgcattaaagcagaacacaattgtt
tacttggagactggttctggaaagaccttgattgcaattatgcttcttagaagctatgct
taccttcttcgaaagccgtctccatacatagctgttttcttggtcccgactgttgttcta
gtgacgcagcaaggagattctctcatgatgcataccgacttaaaagtgggcaagtattgg
ggagaaatgggtgttgattattgggatgctgctacatggcaacaacaagtggacacccat
gaggtactggttatgactccagcaatactactttctgctttgaggcatagctttatacaa
ataaacatgataaaagttataatatttgatgagtgccacaatgcacgaggcaaacacccc
tatgccagcataatgatggaattttatcatccccagttaaaccatcagagctcacaactt
ccaagaatatttgggatgactgcttcccctataaagtctaaaggttctagcacggcagat
agttattggcaaaagattcgtgatcttgagaatcttatgaattccaaggtatacacgtgt
ggcagtgaatctgttctggcggagtatatcccattctctaatccgaagttgaagatatac
aaacatgtggatattccttgcacattgtttcttagtttagctcatgacctggaacagttg
aaagaaaagcatgattgttcaatttcaaagtcaaacctgtcttttatgagtgctggaact
gcaagaagacgtttatcaaaactttattcggccttcttattttgtttgagtgagatgggt
gcttggctggctttcaaggccactgagttcttgtcccgtgaagaagttgatttcttttca
tggggagaattagatgtatgtgctcaaacaattgttagagatttcagtttgggtgcatct
aagattttttcggctcgcttaccttctgggccacattggtcaattggtggtgatattaag
gcaaatgtggatgctggatatctgtcatccaaagttacttgtcttctagagtctcttctc
gagtacagggaccagaaggatttgagatgcatcatatttgttgagagaattattacagcc
attgttcttcggtctctattgaatgagttgcttccggaactatgtggttggagaactgag
tacacagcaggacatatttctgtggtccagtcacagagtaggaaattacaaaacaaaatt
gttgaagaatttcgcaaggggttggtgaacattattgtagcaacatctattcttgaagag
ggcttggatgttcaaagttgcaaccttgtcattcgatttgatccctcagctactgtttgt
agctttatacaatcacgtggacgagctcgaatgcaaaactctgactttcttctgatggtc
agaagtggggatgattcgacccttactcgcatgcacaactatatggctagtggggagata
atgcgacaagaatcattacgtcatgcttctattccatgttcacctctagatgatgaattg
tatgatgagccttgctacaaagttgaaagcacaggagcaattgtcaccctcagttctagc
gtgtcattgttatacttatattgctcaaggctaccatcggatgggtactttaaacccaat
cctaggtgtgtgattgataaggaaacaggaacctgcacgctgcaacttcccaaaagttgc
cctctgcaaagaattattagtgtacaggggaatagcaaaatatcgaagcaacttgcatgc
ctggaagcttgtaaagaacttcatcgtgtgggtgccttaactgacaatcttgttcctgat
atcatggaagaagaaatcatcaacaaagaatcagaatgtcaaatccatactgttgaagaa
tcaaaatactttccaccagaattggttagtcattgcggcaatgattcagaagcactgtac
tactgctacctagttgagttgcaacatgacttttacaacgatttccagcttcatggaatt
atacttgctgttaggacaaggcttaagtttgatgatgaaataatggcatttgacttggac
gtagataggaggggacgcttacaagttcaacttaattatcataaagttgttgcacttact
tctgaagagattcaatggtgtcagaggtttcaatccagcgtcttcagaattcttcttgac
cgtgatctgagtaaactgcaggacgctttggctgcagtccaatcacctattggttctgca
gtttctgattatcttttgctcccatctttgggtactacccctgaaataaattggaaatgc
gtgaattctttgctgtttccgtctcaagttcttggggataagcatatggattgctgctct
acacaaggttgcaaacgcagtgtgagcaccaaaactggggtggtatgtagctgcatgttg
gagaactcattggtctttacacctcataatggccatatatactgcattactggttttttg
gataatttggattgcaactcattgttggatatgagaactggagaacccattacctacata
aaatactacaaaaagcggcatgggattaacatatgctttgaagaagaaccacttcttagg
ggaaaacacatttgtaaggtgcacaattaccttcaaagatgcagaacacagaaggctaaa
gattcaactgattcatctgttgagttgcctcctgaactttgttccctcatcatgtcacct
gtctctatttctacccttaatacctattcatatgttccttcgatcatgcatcggattgag
tccttggttatggcctcaaacttgaaaaaaatgcatttggatcactgcacactaaatatt
tttattccgaccgttaaggttttggaagcaatgacaacaaagaaatgcctcgagacgttt
catttggagtcacttgagacacttggagacgcttttctcaaatatgctgccagtatacag
ctattcaagacttacgaaaatcatcatgagggtcttctcactgttaagaaaaacaaaatc
atttccaatgatgcactatgcaggcttggatgtgctcgtaaaataccgggatttatccgt
aatgaaccatttgatcttaaagcgtggctcattcctggtgataattctcaaattcacacc
ttcgacgaagagttcctaacttcttcagataaaatgtatagtagagaaaaacagaagttt
aaaagtaagagagtagctgatgttgttgaggcactaataggtgcctacctcagctcgggc
ggggaagtagcggcgttatcatttatgaaatggcttggggtggacatcgattttgttgat
gcacctttgccaatgcactttcccatgaatgctgagaagctaatcaatgtcagatacttg
gaatccctgctacattacaagttcaatgatccttctctgcttgttgaagcgctaactcac
ggatcttacatgctacctgagattccacgatgctatcagcgcttggaatttcttggagat
gcagtgctagattatgttgttacagcacatctctatttcaagtatccaggactgactcca
ggactaattactgatttgaggtccgcctccgtaaacaatgagtgttatgctcagtctgca
gttaaggctggcctgcacaagcacattcttcatgcctcgcaagatctgcagaggcaaata
cttagtactgttgaggatttcgaaaaattggatcttctgtccacattcggatgggaggct
gaaactactttcccaaaggtgcttggagatgttattgaatcccttggtggtgcgatcttt
gttgattctggcttcaacaaagacactacatttcaaagcatacgacctcttttggaaccg
ttggttactcctcagacagtaaagctccaaccagtaagagagttaagtgaactatgtgac
cagaaaggttatataaagaagaaggatgtcgtctctcgtgagaatggtgtagcatatatt
acagtagaggttgaagcaaatggtgttattcacaagagcacatgctcgggacgagacaaa
ataatggccaagaaggtggctagcaaaaatgtcctcaagtctctgaaagaatgtccatcc
aatgcttag
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