Solanum stenotomum: 125873024
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Entry
125873024 CDS
T08385
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
sstn
Solanum stenotomum
Pathway
sstn03082
ATP-dependent chromatin remodeling
sstn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125873024
03083 Polycomb repressive complex
125873024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125873024
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
125873024
Histone modification proteins
HAT complexes
HATB complex
125873024
HDAC complexes
Sin3A-HDAC complex
125873024
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
125873024
PRC2.2
125873024
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
125873024
Heterochromatin formation proteins
Other heterochromatin formation proteins
125873024
Chromatin remodeling factors
NuRD complex
125873024
NuRF complex
125873024
NuRF complex (fruit fly)
125873024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
MIOS_WD40
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
125873024
NCBI-ProteinID:
XP_049409828
LinkDB
All DBs
Position
1:7193473..7198708
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSQFKQGHLLSGSDDAHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
PKGP
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaagatgagatgaggggtgaaattgaggagaggctgataaacgaggag
tacaagatttggaagaagaatacaccttttctttacgatctggttattactcacgcgctt
gaatggccttcgctcaccgttgaatggttaccggaccgggaagagccgtctggaaaggat
tattccgttcagaagatgattttggggactcatacatcggaaaatgagcccaattatctc
atgcttgctcaggttcagcttcctcttgaggatgctgagaatgatgcccgacactatgat
gatgatcggtctgaatttggcggatttggctgtgccaatggcaaggtacaaataatccag
caaataaatcatgatggagaggttaatcgggctcgatatatgccccaaaacccatttatc
attgcaactaagacagttagtgctgaagtatatgtttttgactacagtaaacatccatct
aagcctcctctagatggtgcatgcaatccagatttgaggttaagaggccacagtacagag
ggctacggtttgtcttggagtcaatttaagcagggtcatttattgagtggttcagatgac
gcacatatatgtttatgggacattaatgccactcccaaaaataaggctttagaggctatg
cagatatttaaggttcatgaaggtgttgttgaggatgtagcttggcatctgaggcatgag
tatttatttggctctgttggggatgatcagtatctgcacgtctgggatctgcgaactcca
tcagtaaccaagcctatacaatctgtagttgcacatcaaagcgaggttaactgcttagct
ttcaacccctttaatgaatgggttgtggcaacagggtctacagacaagacagttaaatta
tttgatctacgcaagatttctactgcacttcatactttggattgtcacaaagaggaagtt
ttccaggttggttggaatccgaagaatgaaaccattttagcttcttgttgccttggtagg
agactcatggtgtgggatctcagcaggatcgatgaggaacaaactccagaagatgcagaa
gatggaccaccagagttgctctttattcatggtggccatacaagtaaaatttcagacttc
tcatggaacccatgtgaagattgggtcgttgctagtgttgctgaggataatatactacaa
atctggcagatggctgaaaacatctaccatgatgaagatgatctgcctggagatgatgcc
cccaaaggtccctag
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