Solanum stenotomum: 125873285
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Entry
125873285 CDS
T08385
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125873285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125873285
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125873285
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125873285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125873285
NCBI-ProteinID:
XP_049410145
LinkDB
All DBs
Position
8:complement(3315564..3327410)
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AA seq
658 aa
AA seq
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MSGLLNSSLNGSASNLPDNSGRSFPSSFSPQSGAASPLYHHSGSIQGLHNVHGSFNVPNM
PGTLGSRNTAINNVPSSGVQQSGNSLSGGRFASNNIPVALSQISQGSSHGHSGMTSRGGM
SVVGNPGYSSNNNGVGGSIPGILPTSAAIGNRSSVQGLGMSTILGNAGPRMSNSVGNIVG
GGNIGRNISSGAGLSVPGLGSRLNLTANTGSGNLNVQGSNRLMGGVLQQASPMSMFGNSY
PTGGGPLSQNHVQAVGNLNSMGMLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGSL
RKQIAQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTISMMQQQHFSAQMGR
SGGFNLGGTYSSLRSQQQQQHASSVSNSGLSFSNVNNQDPLHLHGSDVFPSSHSSYHQQS
GGPPGIGLRPLNSPSTVSGIGSYDQLIQQYQQQTQSQYRLPHMSAISQPYRDQGMKSMQA
QAAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAKG
DPEFTVPQCYYAKQPPPLNQAYFSKLQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHR
EHRLWFMRVANLEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPILPQH
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcatctctgaacgggtcagcttcaaatcttcctgacaactcc
ggacgctcatttccttcatctttctctcctcaatcgggtgcagcctcccctctttatcat
cactctggaagtattcagggccttcataacgttcatggaagtttcaatgttcctaacatg
ccgggtacacttggttcaagaaacacggcaataaataatgtcccttcaagtggagtacaa
caatctgggaatagcctctctggtggtcgttttgcatcaaataatattcctgtagccctt
tcacagatatcccagggaagttctcatggtcattctggcatgacaagtagaggtggtatg
agtgttgttggtaacccgggatatagtagtaacaataatggtgttgggggttctattcct
gggattcttccaacctctgcagcaataggtaatcgaagttctgttcaaggccttgggatg
tccacaattttgggaaacgcaggtccaaggatgtcaaattcagttggaaatatagtcggt
ggaggcaacattgggagaaacatcagctctggtgcaggattgtctgtgcctggtcttggt
tccagactaaatttgactgcgaacactggttctggaaatttaaatgttcaaggatctaat
aggctaatgggtggtgttctgcagcaagcctctccgatgtctatgtttggtaattcatat
cctactggcggtggtccactatctcagaaccatgttcaagcggttggcaaccttaattcc
atgggaatgctgaatgatgtgaattcaaatgatggatctccatttgatatcaatgatttc
cctcagctaagcagccgtcctagttctgctggagggcctcaaggacaattaggttcattg
cgaaaacaaattgctcagcaaaatcaagaattcagcattcaaaatgaagattttccggcc
ttgccaggattcaaaggtggaaatgctgattatgctatggatctacaccagaaagaacaa
ctacatgataatactatttctatgatgcagcagcagcacttctctgcacagatgggcaga
tctggtggttttaacttgggagggacatactcatcacttcgctcacagcagcagcagcaa
catgcctcatcggtgagtaatagtggtctctctttttcaaatgtaaacaaccaggatccg
ctacatttacatggttcagatgtcttcccgtcatcacactccagttatcaccaacagtct
ggtggacctcctggtattgggttacggcctcttaattctccaagtactgtttctggtatt
ggctcatacgatcagcttatccagcagtatcagcaacagactcaatctcaatatcgcctg
ccgcatatgtccgctataagccagccatacagggatcagggtatgaaatccatgcaggct
caagctgctcctgacccttttggtatgcttggcttgctaagtgtaataagaatgagcgat
ccggatctgacttctcttgcacttggaatcgatcttacgactcttggattgaacttgaac
tctgctgaaaatttacacaaaacgtttggttccccgtggtctgatgagcctgccaagggt
gatccagaatttacggtaccacaatgttattatgccaagcaaccacctcctctaaatcaa
gcatacttttccaagcttcagttagacactttgttttacattttctacagcatgccaaag
gatgaagcacaattatatgctgctaatgaattgtataaccgggggtggttttaccacaga
gaacatcgattgtggtttatgagggttgccaacttggagcctcttgtcaaaaccaacgcc
tatgagagaggatcttatatttgttttgatccaaacacatgggagacaatccgcaaggat
aatttcgtactccactatgaaatgttggaaaaaagacctattctacctcagcactaa
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