Solanum stenotomum: 125873500
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Entry
125873500 CDS
T08385
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125873500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125873500
03036 Chromosome and associated proteins [BR:
sstn03036
]
125873500
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125873500
Coactivators
SAGA/TFTC/STAGA complex
125873500
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125873500
STAGA complex
125873500
TFTC complex
125873500
SAGA complex
125873500
SLIK complex
125873500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_NTD2
WD40
WD40_Prp19
WD40_MABP1-WDR62_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WDR55
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_HPS5
Ge1_WD40
Beta-prop_SPT8
LisH_PAC1
Nbas_N
Beta-prop_VPS8
RAB3GAP2_N
PALB2_WD40
WD40_like
LisH
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
125873500
NCBI-ProteinID:
XP_049410385
LinkDB
All DBs
Position
8:13257793..13275355
Genome browser
AA seq
396 aa
AA seq
DB search
MDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQLNKNSSSSIHNNNSANSQIDPDLTKKILS
FSEFETGPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGHIQEARAF
FNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRLSKVNIKMCQYSYDLLLQYLHK
TESITMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQKEVHWGCVQWHAN
CNYIATGSSDKTVRLWDVQSGDCVRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDL
SSGRCITPLVGHSSCVWSLAFSGEGSLLASGSADCTVKLWDVTTSTKAPLKEENKSGSNN
RLRLLKTLPTKATPVYALHFSRRNLLFAAGAFSKSA
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaag
caaacggagattgcttttcaagaagaacagcaactgaataaaaacagctcttcttcaatc
cacaacaacaactccgcaaattctcagattgaccccgacttaaccaaaaaaatcctttct
ttctctgaatttgaaaccggtccccaacgataccaagaagaatatagcaagcttcggtca
tgggcctatagttcactggacttgtataagcacgagttgcttcgtgttttgtatcctgta
tttattcattgtttcatggaacttgtcgctagaggtcatattcaagaagcacgagccttt
ttcaatagttaccgtgaagaccatgagatgacgcatttgcgtgatcttcagaagttagaa
ggcgttctctcaccatcccatctagaggaaatggaatttgctcattctatacggctgagc
aaagtgaacattaagatgtgtcagtactcctatgatcttttgctgcaatacttgcacaag
acagaatctattacaatgcttgggatcatcaatgagcgcattaattttcaagtttctcct
ggacagcctggctctatatctgatgatgcggaagttgtaactcttgttgcaagtggccat
gatgctagtctcataaatcagaaagaagttcattgggggtgtgtgcaatggcatgcaaat
tgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagc
ggcgattgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtct
cctgatggtcgatatatggcatccggtgatgaagatggaacagtaatgatgtgggatctc
tcaagtggacgttgtattactcctttggtcggtcattcctcctgtgtgtggtcacttgct
tttagtggtgaaggctcacttcttgcatctggctctgctgattgcactgtaaaattatgg
gatgtaaccacaagcaccaaagcgccactaaaagaagagaacaaatctggaagtaacaac
agacttcgtttattgaagaccctgcctaccaaagctactccagtctatgctttgcacttt
tcacgaagaaatcttctatttgccgctggagctttctcgaaaagtgcatga
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