Solanum stenotomum: 125873555
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Entry
125873555 CDS
T08385
Name
(RefSeq) LOW QUALITY PROTEIN: probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125873555
03036 Chromosome and associated proteins [BR:
sstn03036
]
125873555
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
125873555
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125873555
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
125873555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
AAA_22
AAA_16
Helicase_RecD
PIF1
ATPase_2
SLFN-g3_helicase
Mov-10_helical
Flavi_DEAD
AAA
Motif
Other DBs
NCBI-GeneID:
125873555
NCBI-ProteinID:
XP_049410420
LinkDB
All DBs
Position
8:complement(16945821..16948907)
Genome browser
AA seq
886 aa
AA seq
DB search
MATIAYKSDDEYSTITDKGDIGFIDFDKYKXAYSYNPNEESDIVVISVPFPLIEGKPKSG
FVGETVVDSITIENTTNETVELWSIKIYDSKPEDSFTLSLMKPPTACSDLQYVEEFMESF
SLEDRMLQPGRPLTVWLTCKPKEIGLHTSAVHFNVGDDNIERLVFVLSEDKVSQSLNSSR
PFHRNRRKKAPAIDVGFVGGSRPMRDSYSIFRHKLLSYPIPRDVREMIEKKRFPDVIGEG
LRRDNYVAYFRTLLAIEEIKMEEDMRDYDMESVTMKRRGPHFLSLHVPGLAERRPSLVDG
DHIFAKLATTCASEIITPYQGYIHRVEAEEVFLKFDKEFHDNHVGRNLYNVQFAFNRMGV
RRLHQAIEATESLDGEIIFPSVISSTRNIQAAVLAPRNSCMLNKEQTSAVEKILGCEGGA
PYVIHGPPGTGKTRTLIEAIIQLHITRKDARVLVCAPSNSAADHILEKLMSQQNVEVREH
EIFRLNALTRPLDDVNPSCLRFCNVEDNAFKCPLLRELRRYRVIISTYASAFLLYAQGIK
RGHLSHIFLDEAGQASEPDTMIPLSHLLRKETVVVLAGDPRQLGPVVFSKDAERYGLGRS
YMERLFECELYSSLNENNATRLVRNYRCHPAILQLPSEMFYGGECMSIPCKEDDKTWLPP
NKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIQNKGLKEEDIGVITPYRQQ
VLKIRRALIQSFDWANIKVGSVEQFQGQERQVIIISTVRSTIQHNDFDRIHYLGFLNNPR
RFNVAVTRARSLLVVIGNPHIICKDHYWNKLLWYCADNGSYKGCFLPEKLEIVQDDSEQA
KSWDCEGAQANDWNQDQDQGGQVHNWDQDQEQGGYVNNWDQELGTS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggccacaattgcttataagtcagatgatgaatactcaactattactgataaaggagac
attggattcatagactttgacaaatataaataagcttatagctacaatccaaatgaagag
agtgatatagttgttatatctgttccatttccgctgatagagggaaaacctaaatcaggc
tttgttggggaaactgttgttgattcaatcacaatagagaatactaccaatgaaaccgtg
gagctgtggtcaattaagatctatgactcgaaacctgaggattcattcacgctatctctg
atgaaacctccaactgcttgttctgacttgcaatatgttgaggaattcatggagtccttt
agcttagaggatagaatgttacaaccaggtcggccactaactgtatggctgacttgtaaa
cccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggtgatgacaacata
gaaaggctagtttttgtcttatctgaggacaaggtttcccaatccctgaattcgagtagg
ccattccacagaaacagaaggaagaaagcgccagcaatagatgttggattcgttgggggt
tctcgtcctatgagggattcatatagtatattcagacacaaacttctgtcatatccaatt
ccacgggatgtaagggaaatgatagagaagaaacgatttcctgatgttattggggaaggt
ttaagaagagataattacgttgcctattttagaactttactagcaattgaagaaatcaag
atggaggaagacatgagggactatgatatggagtccgtcaccatgaagcgcaggggacca
cactttttgtcccttcatgtcccagggctggctgagaggaggccatcgcttgttgatggt
gatcatatctttgcaaagctagctaccacatgtgctagtgagatcattaccccttaccag
ggttatattcaccgagttgaagcagaagaggtatttttgaagtttgataaggaatttcac
gacaaccatgtaggtagaaacctttacaacgtgcagtttgccttcaaccgtatgggagtg
cggaggttgcatcaagccattgaagcgacagaaagcttagatggagaaattatatttcca
tcagtcatatccagcacaagaaacatacaagctgctgtgctggcacctcgtaattcatgt
atgcttaacaaggagcaaacaagtgctgttgaaaagattctcgggtgcgaaggaggggct
ccatatgttatccatgggcctcctggtacaggaaaaacaaggactcttatagaagctatc
atccagctacatattacgaggaaagatgctcgagttcttgtgtgtgcaccttcaaatagt
gctgcagaccatatacttgagaaacttatgagtcagcagaatgttgaagtgcgggagcat
gagatatttaggttgaatgcactcacacgtcctttagacgatgtgaatcctagttgcctt
cggttttgcaatgttgaagataatgcttttaagtgtcctcttctgagggagcttagaaga
tatagggttatcatatctacatatgctagcgcatttcttctttatgcacaaggcatcaaa
cgaggacacttgtctcatattttcttggacgaggcaggacaggcatcggagcctgatacc
atgattcctctgtcacatcttttaaggaaggagacagtagttgtactagctggtgaccct
cggcaacttggtcctgtagttttctcaaaagatgctgaaaggtatggattggggaggtca
tacatggaaaggttatttgaatgtgagttatatagttctctcaacgaaaataatgctacc
agactagtaaggaactatcggtgtcatccggcaattttgcagcttccttcagaaatgttt
tatggaggagagtgtatgagtatcccatgtaaagaagatgataaaacttggcttccacca
aacaaggaatttcctttgcttttcattggtatacaaggttgtgatgaaagggaaggaaac
aacccatcatggttcaacaggatcgaagcaagcaaggtagtagagatcatcagagatctc
atacagaacaaaggtctcaaagaggaagatattggggtgataacaccttacaggcagcaa
gtactcaaaataagaagagccctaattcagagctttgattgggctaatataaaggttggc
agcgtagagcaattccaaggtcaggagagacaagttattatcatatccaccgtccgatca
actatacagcataatgactttgatagaatccattatttaggatttttgaacaatccgaga
aggttcaatgttgctgttacaagagctagatcattgcttgtagttatcgggaatccacac
atcatctgcaaggaccactactggaacaaacttttgtggtattgtgcagacaatggctcc
tacaaaggctgcttcttacctgaaaaactggagattgttcaagacgactcggaacaagca
aaaagttgggactgtgaaggagcacaagctaatgattggaaccaagatcaagaccaaggg
ggacaagtacacaattgggatcaagaccaagaacaaggaggatatgttaacaattgggac
caagaattgggaacaagttaa
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